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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
EPS74008.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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| Family |
C3H |
| Protein Properties |
Length: 335aa MW: 37460.5 Da PI: 7.2143 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| EPS74008.1 | genome | LSMU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 26.3 | 1.3e-08 | 30 | 49 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26
C f+++ G C yG+rC++ H+
EPS74008.1 30 CTFYQK-GACAYGERCRYDHV 49
9*****.*************7 PP
|
| 2 | zf-CCCH | 20.1 | 1.1e-06 | 117 | 139 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26
+++C+ fa+ G+C+yG++C +Hg
EPS74008.1 117 MPICS-FAAAGECPYGENCANIHG 139
57899.*************76665 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00356 | 0.5 | 1 | 22 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.878 | 1 | 23 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 7.72E-6 | 1 | 21 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.521 | 24 | 51 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.017 | 25 | 50 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.44E-5 | 27 | 48 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.9E-4 | 29 | 48 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.3E-5 | 30 | 49 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.136 | 114 | 141 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.008 | 114 | 140 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF57850 | 1.71E-13 | 172 | 247 | No hit | No description |
| Gene3D | G3DSA:3.30.40.10 | 5.7E-10 | 178 | 242 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| Pfam | PF14634 | 2.8E-7 | 182 | 242 | IPR001841 | Zinc finger, RING-type |
| CDD | cd00162 | 0.00103 | 182 | 242 | No hit | No description |
| PROSITE profile | PS50089 | 12.342 | 183 | 241 | IPR001841 | Zinc finger, RING-type |
| SMART | SM00184 | 1.0E-7 | 183 | 240 | IPR001841 | Zinc finger, RING-type |
| PROSITE pattern | PS00518 | 0 | 207 | 216 | IPR017907 | Zinc finger, RING-type, conserved site |
| SMART | SM00356 | 0.15 | 270 | 298 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.601 | 270 | 299 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 335 aa
Download sequence Send
to blast |
LCKFFAHGAC LKGETCEYAH NWNAPPNNMC TFYQKGACAY GERCRYDHVK ASRLHQQTSS 60
SSTVTSSTSV GLGCSAHEGS FLPESGPAWQ DTYVHIGAPA TESYDVLAVR GDDQAEMPIC 120
SFAAAGECPY GENCANIHGD LCPSCKKHCL HPFRPLEREE HLKTCEKRQK YLEALTRSQE 180
IECSVCLERV LLKPTAAERK FGILSECSHP FCISCIRNWR GRSPTYGLDV TSALRSCPIC 240
RKLSYFVIPS VVWCFSDEEK EEIVESYKAK LKSIDCKHFD FGNGSCPFGT SCFYKHAYRD 300
GRLEEVVLRH LGAEDGNTVI AKNIRLSDFL SNLRI
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Sahi VP, et al.
A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
Plant Signal Behav, 2012. 7(3): p. 375-81
[PMID:22499205] - Wadekar HB,Sahi VP,Morita EH,Abe S
MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
Planta, 2013. 237(4): p. 1083-95
[PMID:23262670] - Leushkin EV, et al.
The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
BMC Genomics, 2013. 14: p. 476
[PMID:23855885]
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