PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS73979.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family TCP
Protein Properties Length: 154aa    MW: 17984.3 Da    PI: 9.7543
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS73979.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP109.16.7e-3413115389
         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............ 88 
                 g kdrhsk++T +g RdRRvRls+e+a++++dLqd+LG+ ++sk ++WLl+ ak ai+el+ + ++++  + +  + ++++++++++            
  EPS73979.1  13 GTKDRHSKVYTVKGVRDRRVRLSVETAIQLYDLQDRLGLNQPSKVVDWLLNVAKNAIDELPPLHFPPQPTFfS-MHGVQQQQQQQQPfltdyynpnpff 110
                 78*************************************************************9999955542.3333333333333455667666555 PP

         TCP  89 ....k 89 
                     +
  EPS73979.1 111 rfqeD 115
                 55441 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.8E-301387IPR005333Transcription factor, TCP
PROSITE profilePS5136931.0741472IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
KDPRISRVSR ALGTKDRHSK VYTVKGVRDR RVRLSVETAI QLYDLQDRLG LNQPSKVVDW  60
LLNVAKNAID ELPPLHFPPQ PTFFSMHGVQ QQQQQQQPFL TDYYNPNPFF RFQEDPSSNL  120
TLSSRTFDHH HQELHNFGVV QWPSILPSHQ VVVY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-211973155Putative transcription factor PCF6
5zkt_B2e-211973155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015064545.16e-45transcription factor TCP17 isoform X1
SwissprotQ9LEZ92e-36TCP17_ARATH; Transcription factor TCP17
TrEMBLS8D2N31e-109S8D2N3_9LAMI; Uncharacterized protein (Fragment)
STRINGSolyc02g089020.1.14e-44(Solanum lycopersicum)
STRINGXP_009623901.16e-44(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08070.11e-38TCP domain protein 17
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]