PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

GRAS

Protein Properties

Length: 549aa MW: 59724.7 Da PI: 6.6347

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS73977.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	324.3	2.5e-99	178	549	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 +++L+++A a+s+g++e a ++L+rl a+++g ++ qRlaay++ AL++r+ + p+ +++e +++e++ ++k+++ +sP++k++ ++aN EPS73977.1 178 KQALIDAAAAISDGKQESAAEILTRLAPEANNRGtTSKQRLAAYMVSALKSRVGN-------ESPAATAAEVKTDEHAVSTKMLYSASPCFKLGLMAAN 269 589*****************************899*************9.......3445555556788999999************** PP GRAS 100 qaIleavege..ervHiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl..vakrledlelee 193 aIlea + +++H++Df+++qG+Q++ Ll+++a ++p++++ l iT+v++ s+e+l+ +g+ L++ A ++gvp++f+++ ++e+++ e+ EPS73977.1 270 LAILEASTELrfQKIHVLDFELGQGTQYVHLLKTMAaAQPKSAAALTITVVSD-GDISEEKLRIIGDCLKSHALKIGVPLNFHIVdfNFGNIEQISREN 367 **998778*******************96788*********.445***********************9544559**** PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 Lr+ ++EalaVn++++lh+l+desvs+++ rde+L+ vkslsP+vv+vveqe++ n++++++r+ ++ eyysal++sl+a+++ e +r+ ++ +gr EPS73977.1 368 LRIGSDEALAVNFAFKLHKLPDESVSVDNIRDELLRRVKSLSPTVVTVVEQELNSNTAPLATRVRDSYEYYSALLESLDATIAGEVPDRALIDDG-IGR 465 *******************************************************************************************.* PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +i n+v ceg+er+er+e ++kWr+r+++aGF+p+++s aa++ + l+ ++g++v e+sg +++gW++++L ++S+Wr EPS73977.1 466 KIANAVGCEGRERVERCEVFGKWRARMRMAGFQPLSVSPLAAESLRGKLNGGTrvNQGFTVIEDSGGICFGWRGKTLAVASVWR 549 *******************************************999987655789************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	45.081	151	527	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.6E-97	178	549	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm

Sequence ? help Back to Top
Protein Sequence Length: 549 aa Download sequence Send to blast
QQQILFRSPL AGAVQDSAAQ IRRSEFSGKR SLAEFQQNQQ GMEFYLRNVK MRPSYNNQHA 60 SPISPLSPAE LSAIPGISTG AMKPRYGIPI IRQQRTQQLT IAGSPEKSLM NYRLQELEKE 120 LLGDDDGDDD EEAVSVITNS EWSEAIRDLI GKPFSPSPTS SSSSCSSTSV CQPPPCPKQA 180 LIDAAAAISD GKQESAAEIL TRLAPEANNR GTTSKQRLAA YMVSALKSRV GNESPAATAA 240 EVKTDEHAVS TKMLYSASPC FKLGLMAANL AILEASTELR FQKIHVLDFE LGQGTQYVHL 300 LKTMAAAQPK SAAALTITVV SDGDISEEKL RIIGDCLKSH ALKIGVPLNF HIVDFNFGNI 360 EQISRENLRI GSDEALAVNF AFKLHKLPDE SVSVDNIRDE LLRRVKSLSP TVVTVVEQEL 420 NSNTAPLATR VRDSYEYYSA LLESLDATIA GEVPDRALID DGIGRKIANA VGCEGRERVE 480 RCEVFGKWRA RMRMAGFQPL SVSPLAAESL RGKLNGGTRV NQGFTVIEDS GGICFGWRGK 540 TLAVASVWR

Sequence ? help Back to Top

Protein Sequence Length: 549 aa Download sequence Send to blast

QQQILFRSPL AGAVQDSAAQ IRRSEFSGKR SLAEFQQNQQ GMEFYLRNVK MRPSYNNQHA  60
SPISPLSPAE LSAIPGISTG AMKPRYGIPI IRQQRTQQLT IAGSPEKSLM NYRLQELEKE  120
LLGDDDGDDD EEAVSVITNS EWSEAIRDLI GKPFSPSPTS SSSSCSSTSV CQPPPCPKQA  180
LIDAAAAISD GKQESAAEIL TRLAPEANNR GTTSKQRLAA YMVSALKSRV GNESPAATAA  240
EVKTDEHAVS TKMLYSASPC FKLGLMAANL AILEASTELR FQKIHVLDFE LGQGTQYVHL  300
LKTMAAAQPK SAAALTITVV SDGDISEEKL RIIGDCLKSH ALKIGVPLNF HIVDFNFGNI  360
EQISRENLRI GSDEALAVNF AFKLHKLPDE SVSVDNIRDE LLRRVKSLSP TVVTVVEQEL  420
NSNTAPLATR VRDSYEYYSA LLESLDATIA GEVPDRALID DGIGRKIANA VGCEGRERVE  480
RCEVFGKWRA RMRMAGFQPL SVSPLAAESL RGKLNGGTRV NQGFTVIEDS GGICFGWRGK  540
TLAVASVWR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-33	179	549	6	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076123.1	0.0	scarecrow-like protein 8
TrEMBL	S8EMR1	0.0	S8EMR1_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.F01094.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4023	24	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52510.1	1e-102	SCARECROW-like 8

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]