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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS73837.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | CO-like | ||||||||
Protein Properties | Length: 412aa MW: 46381.8 Da PI: 8.1039 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 34 | 6e-11 | 58 | 101 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+++++k+++++C ++ +lC++C ++ H++ H++v EPS73837.1 58 ARACDNCGKKRARWYCAADDAFLCQSCDSSVHSDralsrrHERV 101 678*****************************668888888876 PP | |||||||
2 | CCT | 67.5 | 3.7e-23 | 354 | 396 | 1 | 43 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+ EPS73837.1 354 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR 396 9****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.7E-10 | 56 | 103 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 11.519 | 56 | 103 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.3E-9 | 58 | 101 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.83E-11 | 59 | 103 | No hit | No description |
PROSITE profile | PS51017 | 16.083 | 354 | 396 | IPR010402 | CCT domain |
Pfam | PF06203 | 6.1E-18 | 354 | 396 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MLRLRRPPSS SKKGQVRVRN SSSSFSSVRR EEEIRSLDRE SSMAPDRKLA NVVGGKSARA 60 CDNCGKKRAR WYCAADDAFL CQSCDSSVHS DRALSRRHER VRLKTSTGED VSPPTWHRGF 120 TKKARTPRQK KNGKFHLEEP TGGKTENHNP LYLVPEICGE EQSQSHEENE EQLLYRVPVF 180 DPFGTEAELG SNSSSSAGAA IESRTHNFVS NFNGFLQPDM DLAEFAADVE CLLGKGLDDS 240 CFDMEELGIF DRPLKSEVET ALVMNENHQI DEKSIDDLPV PVVPCGGEEY EEDDTKTTFL 300 KLDLDGILSA WNSRNTPWIT GQKPDSKSID FWPDFFGTTA ARGDVWAAGG DGGREARVSR 360 YREKRRTRLF SKKIRYEVRK LNAEKRPRMK GRFVKRCSSS SSSAFPSSLI HQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 364 | 380 | RRTRLFSKKIRYEVRKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011076793.2 | 1e-127 | zinc finger protein CONSTANS-LIKE 16 | ||||
Swissprot | Q8RWD0 | 1e-93 | COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16 | ||||
TrEMBL | S8EME7 | 0.0 | S8EME7_9LAMI; Uncharacterized protein | ||||
STRING | XP_010265147.1 | 1e-111 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1539 | 24 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 2e-85 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
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