PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS73834.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

GRAS

Protein Properties

Length: 385aa MW: 43906.7 Da PI: 5.7721

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS73834.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	374.7	1.2e-114	10	385	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal.ppsetsekn.......sseelaalklfsevsPilk 92 +lL++c+e ++s+d + +++ Larl e+asp+g ++++Rlaay+teA + r+a++++++++ ++e + +++ +al+++++v+Pilk EPS73834.1 10 SLLINCVEQIASKDIAGVNHSLARLGEIASPTGpTAVHRLAAYYTEAFSLRVAKQWPHIFQLTlVSRELDC-GgaadddqRTSNSSALRFLNQVTPILK 107 69*******************************************************987634444321.123344457888899999***** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191 f h+ N+ +l+a+eg++r+HiiDfdi qGlQWp+L+q+LasR+ +p ++RiTg+g+ sk+el etg+ L+ fAe+l++pf+f++ v++rled++l EPS73834.1 108 FIHFSSNEILLRALEGKDRIHIIDFDIRQGLQWPCLFQTLASRTIPPSHVRITGIGE----SKQELIETGDHLSGFAEALNLPFKFHP-VVDRLEDVRL 201 *****************************************************....***********************.7***** PP GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290 ++L+vk++E++aVn+ +qlh+l +++ + +++L l+ s++++ vv++eqea+hn++sF r++++l+yys++fd+l+++lp s+ r+k+E++ EPS73834.1 202 WMLHVKENESVAVNCTFQLHKLTYDETGEK--LQDFLGLIHSTNAEAVVIAEQEASHNEASFDSRVASSLRYYSTVFDALDSSLPLGSKMRRKIEEM-Y 297 ******************85554443..589**********************************************************.9 PP GRAS 291 greivnvvacegaerrerhetlekWrerle.eaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaWr 374 g ei+++v++eg+errerhe++ +W+e + + GF ++ ++e++++ k++l++++s+ yrve +++++++l d+pL+svS Wr EPS73834.1 298 GYEIRDMVSNEGRERRERHERFDRWEETMAgKGGFVSMGIEEREVQLCKMILKMYESKDYRVErkqDKKKAITLSYADQPLYSVSGWR 385 ***********************9972699******************9996533467777************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	51.565	1	362	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.1E-112	10	385	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
EDDSAEEVFS LLINCVEQIA SKDIAGVNHS LARLGEIASP TGPTAVHRLA AYYTEAFSLR 60 VAKQWPHIFQ LTLVSRELDC GGAADDDQRT SNSSALRFLN QVTPILKFIH FSSNEILLRA 120 LEGKDRIHII DFDIRQGLQW PCLFQTLASR TIPPSHVRIT GIGESKQELI ETGDHLSGFA 180 EALNLPFKFH PVVDRLEDVR LWMLHVKENE SVAVNCTFQL HKLTYDETGE KLQDFLGLIH 240 STNAEAVVIA EQEASHNEAS FDSRVASSLR YYSTVFDALD SSLPLGSKMR RKIEEMYGYE 300 IRDMVSNEGR ERRERHERFD RWEETMAGKG GFVSMGIEER EVQLCKMILK MYESKDYRVE 360 RKQDKKKAIT LSYADQPLYS VSGWR

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

EDDSAEEVFS LLINCVEQIA SKDIAGVNHS LARLGEIASP TGPTAVHRLA AYYTEAFSLR  60
VAKQWPHIFQ LTLVSRELDC GGAADDDQRT SNSSALRFLN QVTPILKFIH FSSNEILLRA  120
LEGKDRIHII DFDIRQGLQW PCLFQTLASR TIPPSHVRIT GIGESKQELI ETGDHLSGFA  180
EALNLPFKFH PVVDRLEDVR LWMLHVKENE SVAVNCTFQL HKLTYDETGE KLQDFLGLIH  240
STNAEAVVIA EQEASHNEAS FDSRVASSLR YYSTVFDALD SSLPLGSKMR RKIEEMYGYE  300
IRDMVSNEGR ERRERHERFD RWEETMAGKG GFVSMGIEER EVQLCKMILK MYESKDYRVE  360
RKQDKKKAIT LSYADQPLYS VSGWR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	5e-57	1	384	11	377	Protein SCARECROW
5b3h_D	5e-57	1	384	11	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011072178.1	1e-179	scarecrow-like protein 28
Swissprot	Q9CAN3	1e-147	SCL28_ARATH; Scarecrow-like protein 28
TrEMBL	S8D2A3	0.0	S8D2A3_9LAMI; Uncharacterized protein (Fragment)
STRING	EOY24632	1e-171	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5568	24	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63100.1	1e-141	GRAS family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]