PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS73728.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

GRAS

Protein Properties

Length: 372aa MW: 41696.8 Da PI: 6.2728

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS73728.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	423.3	2.1e-129	4	372	4	374
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102 L+ecA+ v+ g +++a++++ l+ ++s +gdp +R+aay++eALaar+a s+ +ly+al+++ ++ s ++l+a+++++ev+P+++f++++aN aI EPS73728.1 4 SLFECATLVHRGAFAKATEMIGALRGRVSISGDPSERIAAYMVEALAARIATSGRGLYRALQCKVQP---SPDRLSAMQVLFEVCPCFRFGFMAANGAI 99 69**************************************************************9...9************************ PP GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp. 198 lea ee+vHi+Dfd++qG Q+ +L+q+La+ ++++p+l++Tgv++pes+ le +g+rL+++A l+++fef++ va++++ +++++L++++ EPS73728.1 100 LEACRDEEKVHIVDFDVNQGSQYYTLMQTLAQIDGPKPRLKLTGVDDPESVqrAVGGLEIIGRRLEELAGMLHLSFEFRA-VASETALVTPSMLECQQa 197 *********************************************99878889*******************.79***********9 PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297 +Eal+Vn+++qlh+++desvs+e++rd++L++vksl+Pk+v+vveq++++n+++Fl+rf+ea +yy ++f+sl+a lpr+s++r++vE+++l+r+i n+ EPS73728.1 198 DEALVVNFAFQLHHMPDESVSTENPRDRLLRMVKSLNPKLVTVVEQDVNTNTAPFLARFAEAYDYYGSVFESLDAALPRDSQDRMNVEKQCLARDIINI 296 *********************************************************************************************** PP GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 vaceg+er+er e ++kWr+r+++aGF p p+s+++ +++k l+r+++++ y+v +e g+l +gW+d+ L++ SaWr EPS73728.1 297 VACEGEERIERYEVAGKWRARMSMAGFVPFPISNRVRAEIKGLIRRYSDR-YKVRDETGALHFGWEDKILIFSSAWR 372 ********************************************66.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.432	1	353	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.1E-127	4	372	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
PKASLFECAT LVHRGAFAKA TEMIGALRGR VSISGDPSER IAAYMVEALA ARIATSGRGL 60 YRALQCKVQP SPDRLSAMQV LFEVCPCFRF GFMAANGAIL EACRDEEKVH IVDFDVNQGS 120 QYYTLMQTLA QIDGPKPRLK LTGVDDPESV QRAVGGLEII GRRLEELAGM LHLSFEFRAV 180 ASETALVTPS MLECQQADEA LVVNFAFQLH HMPDESVSTE NPRDRLLRMV KSLNPKLVTV 240 VEQDVNTNTA PFLARFAEAY DYYGSVFESL DAALPRDSQD RMNVEKQCLA RDIINIVACE 300 GEERIERYEV AGKWRARMSM AGFVPFPISN RVRAEIKGLI RRYSDRYKVR DETGALHFGW 360 EDKILIFSSA WR

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

PKASLFECAT LVHRGAFAKA TEMIGALRGR VSISGDPSER IAAYMVEALA ARIATSGRGL  60
YRALQCKVQP SPDRLSAMQV LFEVCPCFRF GFMAANGAIL EACRDEEKVH IVDFDVNQGS  120
QYYTLMQTLA QIDGPKPRLK LTGVDDPESV QRAVGGLEII GRRLEELAGM LHLSFEFRAV  180
ASETALVTPS MLECQQADEA LVVNFAFQLH HMPDESVSTE NPRDRLLRMV KSLNPKLVTV  240
VEQDVNTNTA PFLARFAEAY DYYGSVFESL DAALPRDSQD RMNVEKQCLA RDIINIVACE  300
GEERIERYEV AGKWRARMSM AGFVPFPISN RVRAEIKGLI RRYSDRYKVR DETGALHFGW  360
EDKILIFSSA WR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-60	4	372	7	375	GRAS family transcription factor containing protein, expressed
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011101883.1	0.0	scarecrow-like protein 1
Refseq	XP_011101887.1	0.0	scarecrow-like protein 1
Refseq	XP_011101891.1	0.0	scarecrow-like protein 1
Refseq	XP_011101898.1	0.0	scarecrow-like protein 1
Refseq	XP_020547813.1	0.0	scarecrow-like protein 1
Swissprot	Q9SDQ3	0.0	SCL1_ARATH; Scarecrow-like protein 1
TrEMBL	S8ECQ0	0.0	S8ECQ0_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.C01100.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8967	24	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21450.1	0.0	SCARECROW-like 1

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]