PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS73650.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family M-type_MADS
Protein Properties Length: 253aa    MW: 29229.4 Da    PI: 9.8291
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS73650.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.63.3e-131152344
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                i n+  r   + kR++g+ K A+ELS+LC++++a+i++++ g
  EPS73650.1 11 ITNQKSRIKAYEKRKKGLEKGAHELSTLCGVDIAMILYGPLG 52
                899999*********************************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.6E-12160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.708161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-15153IPR002100Transcription factor, MADS-box
CDDcd001202.41E-16252No hitNo description
PRINTSPR004047.5E-9323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-131150IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MGRTKVRMEL ITNQKSRIKA YEKRKKGLEK GAHELSTLCG VDIAMILYGP LGGEGETTTN  60
IWPKEGEDSQ VLSNLIQAYN LSAPHVDSRY RTYNLTSFYK DQTDSINEEM KRLRKKNRDA  120
MYLQWDDKTI RSLSAQDLQK FSATLAAKID AVKGKIDMMK ATRILMAQQK QQQQQQQSMI  180
VMNPPPRLMV EPENVVSFSN MWKFQETTTN QVHPQPQPPF LYHYDPNIRA DQMAMITINN  240
GSSSINNFIR EWF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11425KSRIKAYEKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLS8D2M10.0S8D2M1_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24572253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.12e-16M-type_MADS family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]