PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

EPS73628.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

C3H

Protein Properties

Length: 98aa MW: 11437.9 Da PI: 8.6134

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS73628.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.5	1.3e-09	7	31	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC f+ G C+ Gd C+FaHg EPS73628.1 7 YKTRLCVQFRD-GNCRNGDLCTFAHG 31 9****7777.***********9 PP
2	zf-CCCH	27.8	4.4e-09	67	88	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 +lC+ ++ + +C+yG++C+F H EPS73628.1 67 KLCKKYFNGEECPYGEKCNFLH 88 79****66********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	1.6E-14	3	39	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.44E-8	4	37	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.633	6	33	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.9E-5	6	32	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.1E-7	7	31	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.24E-7	62	91	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.436	63	91	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.017	65	90	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.3E-9	67	90	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.5E-6	67	88	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 98 aa Download sequence Send to blast
GTSHIFYKTR LCVQFRDGNC RNGDLCTFAH GTHDLRHPPS NWQELIRDRG PGNGNWGDDQ 60 TMIQRLKLCK KYFNGEECPY GEKCNFLHER PPPQTMKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011078936.1	3e-46	zinc finger CCCH domain-containing protein 39 isoform X1
Refseq	XP_011078937.1	3e-46	zinc finger CCCH domain-containing protein 39 isoform X2
Swissprot	Q9LT81	1e-34	C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBL	S8ECF5	2e-68	S8ECF5_9LAMI; Uncharacterized protein (Fragment)
STRING	Solyc11g070070.1.1	1e-43	(Solanum lycopersicum)
STRING	PGSC0003DMT400065585	1e-43	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6553	24	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	6e-37	C3H family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]