PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS73621.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C3H
Protein Properties Length: 299aa    MW: 33051.1 Da    PI: 7.4324
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS73621.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.7e-08132153426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 + C++f++ G C +Gd C +aHg
  EPS73621.1 132 SACPDFRK-GACARGDACEYAHG 153
                 67******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902298.63E-5127157IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-5127155IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-5128154IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.441128155IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-6132153IPR000571Zinc finger, CCCH-type
SMARTSM003567.9163186IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.146163187IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MMIGDYFPSK PTVQIPGWDL DPTAQRGYPL SPSLAGPGSS PDSVCDGAFS ALQRYLPSNK  60
DDVAAEEGGG EIDGDDFGIP VDAFSCDDFR MFEFKVKGCA RAKSHDWTEC PFVHHGEKAR  120
RRDPRRYKYS GSACPDFRKG ACARGDACEY AHGVFECWLH PARYRTQICK DGTHCRRRVC  180
FFAHSPDQLR ILAVDSINPK SMPPSSYSPP DSPSGPVSLS QLSETVRILQ LSRLRPAHRT  240
GFFDVGFGSP RHSPLPAIPS PISPPPFQEE SAVTERVESG RALREKLYAK LGEENSLNR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081722.11e-117zinc finger CCCH domain-containing protein 23
SwissprotQ9M0G27e-85C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLS8D8030.0S8D803_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.A00165.1.p1e-104(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18572158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.13e-75C3H family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  3. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]