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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS73590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | GRAS | ||||||||
Protein Properties | Length: 407aa MW: 46050.5 Da PI: 6.5114 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 268.2 | 2.7e-82 | 19 | 405 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsv.selykalppsetsekn....sseelaalkl..fsevsPilkf 93 ++lL+ cA a++s++++laq++L+ l+++a dgd++qRla f++AL +r ++s+ s+l a++ + + +++++++l f++++P+++f EPS73590.1 19 ERLLTYCAAAIESNEATLAQQILWVLNNIAPADGDSNQRLAWGFLRALISRAVKSGnSKLLTAVADVLGDGVEaairRNHRFSIMELagFVDLTPWHRF 117 689*************************************************9954144555543333322223444334444444477********** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvl...va 183 ++ +aN a+ eaveg +Hi+D++ ++++Q p+L++ +a+R ++p +++T+ ++ + + ++ e+g++L++fA+ ++++ef+++ ++ EPS73590.1 118 GFTAANAAVIEAVEGYPVIHIVDLSSTHCMQIPTLIDDIATRMahSPPSLIKLTVAARTGGEipplRDFSYDELGWKLTNFARIRNLTLEFRPVpctHS 216 ******************************************974455589*****995555999999**************************88666 PP GRAS 184 krledleleeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278 + +++l +++L+++p +Eal+ n+++ lh ++ e rd++L+ +sl+P+ vvvve+++d++s+++++r+ +a +y + +ds+e+ + EPS73590.1 217 DGFSSL-IHRLQIQPrdhrREALVLNCHMTLHCIP------ECLRDAFLRSARSLNPRAVVVVEEDVDLSSADLVQRVRSAYNYLWIQYDSMETVV--- 305 677777.999999999999***************9......44567*************************************************7... PP GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee.....sgslvlgWkdrpLvsvS 371 ++r +vE+e + ++i+nvva+eg r+er e +++W +r+++aG+++v+++e +++++k +l++++ ++g + eee + lvl+Wk+++++++S EPS73590.1 306 WRQREWVEAE-IWWKIENVVAQEGWGRVERAEAKGRWVQRMRKAGYGSVRFGEATVEEVKGMLEEHAaGWGLKREEEneeqgIHHLVLTWKGHNVLFAS 403 899*******.********************************************************99999999774443345799************ PP GRAS 372 aW 373 aW EPS73590.1 404 AW 405 ** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 38.708 | 1 | 380 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.2E-80 | 19 | 405 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
RTPPWPDFPT SKSDADCMER LLTYCAAAIE SNEATLAQQI LWVLNNIAPA DGDSNQRLAW 60 GFLRALISRA VKSGNSKLLT AVADVLGDGV EAAIRRNHRF SIMELAGFVD LTPWHRFGFT 120 AANAAVIEAV EGYPVIHIVD LSSTHCMQIP TLIDDIATRM AHSPPSLIKL TVAARTGGEI 180 PPLRDFSYDE LGWKLTNFAR IRNLTLEFRP VPCTHSDGFS SLIHRLQIQP RDHRREALVL 240 NCHMTLHCIP ECLRDAFLRS ARSLNPRAVV VVEEDVDLSS ADLVQRVRSA YNYLWIQYDS 300 METVVWRQRE WVEAEIWWKI ENVVAQEGWG RVERAEAKGR WVQRMRKAGY GSVRFGEATV 360 EEVKGMLEEH AAGWGLKREE ENEEQGIHHL VLTWKGHNVL FASAWAP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_B | 5e-45 | 1 | 407 | 19 | 420 | Protein SHORT-ROOT |
5b3h_E | 5e-45 | 1 | 407 | 19 | 420 | Protein SHORT-ROOT |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027074095.1 | 1e-179 | scarecrow-like protein 32 | ||||
Swissprot | Q9SN22 | 1e-160 | SCL32_ARATH; Scarecrow-like protein 32 | ||||
TrEMBL | S8D2G0 | 0.0 | S8D2G0_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | XP_004303852.1 | 1e-173 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8781 | 24 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49950.1 | 1e-156 | GRAS family protein |
Publications ? help Back to Top | |||
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