PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS73545.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ARF
Protein Properties Length: 575aa    MW: 63379.1 Da    PI: 6.3465
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS73545.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.86e-114485399
                EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3 53 rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                 ++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l+++v+r+
  EPS73545.1  4 AGQPKRHLLTTGWSVFVSAKKLVAGDSVIFI--WNENNRLLLGVRRA 48
                77899**************************..8889999****997 PP
2Auxin_resp118.74.6e-3973156183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aaha +t+s F+v+YnPras+seFv++++k+ ka++ ++vs+GmRf+m+fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  EPS73545.1  73 AAHAEATNSRFTVFYNPRASPSEFVIPLSKYAKAVYhTRVSAGMRFRMHFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 156
                 7999*******************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.278149IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.8E-14361IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-12376IPR015300DNA-binding pseudobarrel domain
PfamPF023623.5E-8448IPR003340B3 DNA binding domain
CDDcd100177.36E-6547No hitNo description
PfamPF065072.8E-3473156IPR010525Auxin response factor
SuperFamilySSF542773.27E-5458533No hitNo description
PROSITE profilePS5174518.725464547IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MGYAGQPKRH LLTTGWSVFV SAKKLVAGDS VIFIWNENNR LLLGVRRANR PHSVMPTSVL  60
SSDSMHIGLL AAAAHAEATN SRFTVFYNPR ASPSEFVIPL SKYAKAVYHT RVSAGMRFRM  120
HFETEESSVR RYMGTITGIS DLDPVRWPNS HWRSVKVGWD ESAAGERQQR VSLWEIEPLT  180
TFPMYTSPFS MRMKRPWPSV LPSVSGFKDG DMGLISSPIT WLPGSGSDRH IQSINFQTIG  240
NAPSPFIQQQ IAAPGLGSQQ QHYHQVMAAF DEPKGSTNDE IFLDFQSNGP QIPSAQLQNG  300
TGQPYLEQHL QNLGENHMLA GDHSSMWKIL IPFFGRHENL DAVSKRVALD PEFHSKASHF  360
GVPNPEELVT LNSGGISNLT ALYPQLPEFR GMSSHSDGNL FGASMLSGGE VSTTGNGLGD  420
SSLSMAAYVA PPFPSDISPS SCIDESSFVP STDDNVDRMN ENHPGFVKVH KSGSFGRSLD  480
ITKFSSYNEL RTELARMFGL DALLEDPQRS GWQLVFVDRE DDVLLLGDDP WQILSPLEVQ  540
QMGILATPGK TPHRFSGDYT TPRSNLNNGI PSVES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-693177214388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF8. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027170288.10.0auxin response factor 6-like isoform X2
SwissprotQ9ZTX81e-125ARFF_ARATH; Auxin response factor 6
TrEMBLS8D2C10.0S8D2C1_9LAMI; Auxin response factor
STRINGMigut.M00109.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.21e-127auxin response factor 6
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Liu N, et al.
    Down-regulation of AUXIN RESPONSE FACTORS 6 and 8 by microRNA 167 leads to floral development defects and female sterility in tomato.
    J. Exp. Bot., 2014. 65(9): p. 2507-20
    [PMID:24723401]
  3. Oh E, et al.
    Cell elongation is regulated through a central circuit of interacting transcription factors in the Arabidopsis hypocotyl.
    Elife, 2015.
    [PMID:24867218]
  4. Minato N, et al.
    The phytoplasmal virulence factor TENGU causes plant sterility by downregulating of the jasmonic acid and auxin pathways.
    Sci Rep, 2014. 4: p. 7399
    [PMID:25492247]
  5. Ortega-Amaro MA, et al.
    Overexpression of AtGRDP2, a novel glycine-rich domain protein, accelerates plant growth and improves stress tolerance.
    Front Plant Sci, 2014. 5: p. 782
    [PMID:25653657]
  6. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  7. Batista VG,Pinheiro MP,Melo Filho PA,Santos RC,Lima LM
    Temporal and tissue expression of genes involved in buds of earliness cotton cultivar.
    Genet. Mol. Res., 2015. 14(3): p. 7386-94
    [PMID:26214417]
  8. Li P, et al.
    Ca(2+) -regulated and diurnal rhythm-regulated Na(+) /Ca(2+) exchanger AtNCL affects flowering time and auxin signalling in Arabidopsis.
    Plant Cell Environ., 2016. 39(2): p. 377-92
    [PMID:26296956]
  9. Barik S, et al.
    Coevolution Pattern and Functional Conservation or Divergence of miR167s and their targets across Diverse Plant Species.
    Sci Rep, 2015. 5: p. 14611
    [PMID:26459056]
  10. Luo S, et al.
    Constitutive Expression of OsIAA9 Affects Starch Granules Accumulation and Root Gravitropic Response in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 1156
    [PMID:26734051]
  11. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  12. Zhang GZ, et al.
    Ectopic expression of UGT84A2 delayed flowering by indole-3-butyric acid-mediated transcriptional repression of ARF6 and ARF8 genes in Arabidopsis.
    Plant Cell Rep., 2017. 36(12): p. 1995-2006
    [PMID:29027578]
  13. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]