PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS73109.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family HB-other
Protein Properties Length: 375aa    MW: 42381.8 Da    PI: 9.9177
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS73109.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox201.2e-0655111157
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                 +r+R  ++++ ++ ++ +F  +  ++++e +e++++ g+t +qV+ +F  +R + +k
  EPS73109.1  55 KRPRDLMNPKAIKYMQYVFSIKDSINKRESREISARFGVTVTQVRDFFTSQRSRVRK 111
                 799**************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.39452112IPR001356Homeobox domain
SuperFamilySSF466895.13E-654114IPR009057Homeodomain-like
CDDcd000861.86E-455111No hitNo description
Gene3DG3DSA:1.10.10.604.6E-555111IPR009057Homeodomain-like
Gene3DG3DSA:1.20.930.102.0E-6205299IPR017923Transcription factor IIS, N-terminal
SuperFamilySSF476761.99E-6206298IPR017923Transcription factor IIS, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
ATPTSYEDLL DAQRDLFQNQ MEKLQELVAV QCKLTGINPL SQEMAAGALS IKIGKRPRDL  60
MNPKAIKYMQ YVFSIKDSIN KRESREISAR FGVTVTQVRD FFTSQRSRVR KFARLYGEKV  120
DVGGDLITST SGSNMPLHPI PLNVVISEST DEGPSNSKRR LDMLSKMEES DFQFTKNIFS  180
SMRKEETFGE QVKLLRWILR IKNPSVLDWF LIEGGLMILA TWLTEAAEEE QTSFLKVIMK  240
VLHYLPLSNA LPAHVSAILQ SVNRLRFYRL SDISHRARVL LSNWSKIFGK SLSSKKNNGL  300
KSASYLQDEM LLKRSIREVM GNESSWDLKD ENSEASMGLP SDNPDKLRAS LPAPPPMLLT  360
AAGDESNKKW GGLPF
Functional Description ? help Back to Top
Source Description
UniProtSeems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269|PubMed:10363371}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079715.11e-163homeobox protein LUMINIDEPENDENS
SwissprotQ387961e-111LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBLS8D0120.0S8D012_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.D00183.1.p1e-161(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52402123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02560.21e-104HB-other family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Chakrabortee S, et al.
    Luminidependens (LD) is an Arabidopsis protein with prion behavior.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70
    [PMID:27114519]