PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

EPS73086.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

Nin-like

Protein Properties

Length: 185aa MW: 21986.5 Da PI: 8.8447

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS73086.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	78.8	6e-25	94	144	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + +++++dl+ y +lp+++AA++++vc+Tv+K+iCR+ G++RWPhRkiks+ EPS73086.1 94 TRNLKVKDLKDYLDLPMEEAARKMNVCPTVIKKICRKSGVERWPHRKIKSI 144 689**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.108	84	165	IPR003035	RWP-RK domain
Pfam	PF02042	2.8E-21	96	144	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
PIPCICCQVL REITHFNGLD VKRLEIHGKL GIITHVVVAK FEFDSHQDRQ IIDFSRRGST 60 SVKRFLLQYF HTCEEEGYFL LQDPLSSFYE RERTRNLKVK DLKDYLDLPM EEAARKMNVC 120 PTVIKKICRK SGVERWPHRK IKSIEAKISK KLQKLCSIDE RERESARADI DMYKRELDMI 180 YQEYS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011088847.1	4e-57	uncharacterized protein LOC105169981
TrEMBL	S8D6M1	1e-134	S8D6M1_9LAMI; Uncharacterized protein (Fragment)
STRING	evm.model.supercontig_126.43	4e-47	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3505	20	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38340.1	1e-07	Nin-like family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]