PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS72354.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

LBD

Protein Properties

Length: 273aa MW: 29818.8 Da PI: 8.5557

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS72354.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	94.5	1.2e-29	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C++dC ++p++ ++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg++++++++l+q+++++ EPS72354.1 4 SCNGCRVLRKGCSDDCSIRPCLewirtSDAQANATVFLAKFYGRAGLVNLINAGPPHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWNLCQEAVDA 102 6*******************9998777889**************************************************************999 PP DUF260 95 allke 99 +l+++ EPS72354.1 103 VLRGA 107 88766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.634	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-23	4	101	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MRVSCNGCRV LRKGCSDDCS IRPCLEWIRT SDAQANATVF LAKFYGRAGL VNLINAGPPH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWNLCQEAV DAVLRGAPIT KMACDMAESQ 120 NGPPLKAYDI RHVSKEDNLS GSNALNRVRF RRRFKRSTKR SRICAAAAEE SIREEALRSP 180 SHESSLSHQS TAELNVERRN RDSGCLSSSL DSSGLEFGQR DSNDGDIELN LTLGLEPKKR 240 CVKAKVVASS ASPSTEISAG ICDVDLRLDF PAS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099556.1	1e-131	LOB domain-containing protein 41
Swissprot	Q9M886	5e-89	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	S8CY86	0.0	S8CY86_9LAMI; Uncharacterized protein
STRING	Migut.L00314.1.p	1e-116	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA886	24	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	4e-81	LOB domain-containing protein 41

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]