PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS71973.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

NF-YB

Protein Properties

Length: 172aa MW: 18574.6 Da PI: 6.9333

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS71973.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	186.3	2.3e-58	22	119	1	98
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegekk 98 vreqdrflPian+srimkk lPan+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy+eplkvyl +yre+eg++k EPS71973.1 22 VREQDRFLPIANISRIMKKGLPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLCRYREMEGDTK 119 69*********************************************************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.9E-54	17	132	IPR009072	Histone-fold
SuperFamily	SSF47113	1.23E-41	25	148	IPR009072	Histone-fold
Pfam	PF00808	5.7E-28	28	92	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.6E-20	56	74	No hit	No description
PROSITE pattern	PS00685	0	59	75	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.6E-20	75	93	No hit	No description
PRINTS	PR00615	1.6E-20	94	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
PGSPPGGGSH DSGGDQSPRS GVREQDRFLP IANISRIMKK GLPANGKIAK DAKETVQECV 60 SEFISFITSE ASDKCQREKR KTINGDDLLW AMATLGFEDY IEPLKVYLCR YREMEGDTKG 120 SAKGPDGSSR KDGSHLSNVG SQLLHHQGSF PQGLNYGSNP PPPPFDDSPA AR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	4e-47	22	113	1	92	Transcription factor HapC (Eurofung)
4g92_B	4e-47	22	113	1	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009620316.1	2e-93	PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X4
Refseq	XP_016449854.1	2e-93	PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X1
Swissprot	Q8VYK4	2e-82	NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBL	S8E805	1e-124	S8E805_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_009620316.1	8e-93	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37060.3	3e-76	nuclear factor Y, subunit B8

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]