PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS71587.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family TALE
Protein Properties Length: 547aa    MW: 58770.5 Da    PI: 7.4213
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS71587.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-093583951954
                 HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 Fe   ++yp+ +++  LA+++gL+ +qV++WF N R +
  EPS71587.1 358 FEHflHPYPTDTDKIMLATQTGLSRNQVSNWFINARVR 395
                 554458******************************98 PP
2BELL95.74.1e-31217287272
        BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                   e+ +kk++Lls+l+eV+krYkqy++q+q  +++Fe vagl  a+p+++lAl+a+S+hFr Lk+ai++q+
  EPS71587.1 217 ASEHTRKKSRLLSMLDEVYKRYKQYYHQVQNAVAAFESVAGLSGAAPFANLALRAMSKHFRFLKNAIVDQL 287
                 67999***************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.7E-43150285IPR006563POX domain
PfamPF075266.8E-35155284IPR006563POX domain
PROSITE profilePS5007111.791336399IPR001356Homeobox domain
SMARTSM003898.4E-10339403IPR001356Homeobox domain
CDDcd000865.94E-13339400No hitNo description
SuperFamilySSF466894.71E-17341406IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-28342403IPR009057Homeodomain-like
PfamPF059202.2E-18356395IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
EEGGADLMGF VGGGMGGGSH VFLDPLGSVQ VNPNSSISDF DHQSFLGNPV AVYKPEALQI  60
DPRGGGAAAT SGQSLSLSLS SHHQTSNLPL ELNLHRYDSP IFAADNNNNN NKDCGGGGGR  120
AYNNNLAAGS CSVSSSIELS KSSVPLGPFT GYASILKGSR FLKPAQQLLE ELCDVSRGIL  180
LEINGASPPD SPLLDPSPPP LIFCSKLDES SADCSEASEH TRKKSRLLSM LDEVYKRYKQ  240
YYHQVQNAVA AFESVAGLSG AAPFANLALR AMSKHFRFLK NAIVDQLQFS AKSSKKRKES  300
SSSSPQSLEN ASSRHAHHHH QHQHHGLGGG FGETPPPVWR PQRGLPEKAV SVLRAWLFEH  360
FLHPYPTDTD KIMLATQTGL SRNQVSNWFI NARVRLWKPM VEEIHMLETR QNQNPSQRNQ  420
DHQQLQQPGN QFNNAGAESS TSASLRRGRD DGSINIEASG GGGGMKPPYD VDRRLLQGIG  480
VGGGGVSLTL GLHQNGVGMA ESYGQPPPIN AARRLGLEPH GGEGYVVAGD FPVGNRQFGQ  540
LMHDFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-16345402158Homeobox protein Meis1
4xrs_B2e-16345402158Homeobox protein Meis1
5bng_A2e-16345403159Homeobox protein Meis2
5bng_B2e-16345403159Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094923.11e-164BEL1-like homeodomain protein 9 isoform X1
SwissprotQ9LZM85e-95BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLS8EG120.0S8EG12_9LAMI; Uncharacterized protein (Fragment)
STRINGVIT_08s0007g01290.t011e-153(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35202237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.11e-84TALE family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  4. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  5. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  6. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  7. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  8. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]