PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS71573.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

bZIP

Protein Properties

Length: 690aa MW: 76312 Da PI: 9.2238

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS71573.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33	1.3e-10	385	420	4	39
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 k rr+++NReAAr+sR+RKka++++Le+ L+ EPS71573.1 385 AKTLRRLAQNREAARKSRLRKKAYVQQLETSRIRLT 420 5889*************************8655555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54768	7.86E-22	22	91	No hit	No description
PROSITE profile	PS50137	14.102	23	92	IPR014720	Double-stranded RNA-binding domain
SMART	SM00358	1.2E-16	24	91	IPR014720	Double-stranded RNA-binding domain
Gene3D	G3DSA:3.30.160.20	1.9E-22	24	90	IPR014720	Double-stranded RNA-binding domain
CDD	cd00048	4.76E-17	24	90	No hit	No description
Pfam	PF00035	4.4E-14	25	88	IPR014720	Double-stranded RNA-binding domain
PROSITE profile	PS50137	8.882	108	178	IPR014720	Double-stranded RNA-binding domain
SMART	SM00358	1.6E-8	109	177	IPR014720	Double-stranded RNA-binding domain
Pfam	PF00035	7.2E-11	110	173	IPR014720	Double-stranded RNA-binding domain
SuperFamily	SSF54768	1.52E-12	110	179	No hit	No description
Gene3D	G3DSA:3.30.160.20	5.7E-12	110	177	IPR014720	Double-stranded RNA-binding domain
CDD	cd00048	1.61E-12	110	176	No hit	No description
SMART	SM00338	8.2E-5	382	447	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.979	384	428	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.2E-8	385	426	IPR004827	Basic-leucine zipper domain
CDD	cd14708	7.59E-21	386	436	No hit	No description
SuperFamily	SSF57959	9.38E-7	386	428	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.0E-7	387	429	No hit	No description
PROSITE pattern	PS00036	0	389	404	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.8E-32	467	542	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 690 aa Download sequence Send to blast
MGDFTGQLEA LLEWKLLGLK CYVFKSRLQE YCQKAGVTAP VYETIKQGPS HEPIFRSSVT 60 VGDTTFDSLP GFFNRKAAEQ SAAEVALMEL AKSSDLLEKS QPVQESGLCK NLMQEYAQKM 120 NYAAPLYECH RDEKPSNRTP MHYCIVDIGG IKYIGASAKT KKQAEIKAAR TALIAIQSAS 180 SPDSANSAYT VVPLKRPASS DLGINSNETA PPALKPKRKR FKKFRSNRRG KKKSSSSEQS 240 AAADIGTDTT MVQSYKNNAA AKMDDAYNSC AADLQDKINA LYDGTTTNRP TTSAAATLEM 300 FPSWPGRGSS RSGEEESTDS AASGLNNTSP ITTKLLASGH HTAAALHHIH HRPVMEDTGG 360 FQTPANYNAE KRRGPGANSD RILDAKTLRR LAQNREAARK SRLRKKAYVQ QLETSRIRLT 420 QLEQDLHRAR SQGVYLEGGG SANGNISSGG TMFDIEYARW LEDDHRHITE LRAALQTHLS 480 DGDLRVIVDG YISHYDEIFR LKGVAAKSDV FHLITGMWTT PAERCFLWMG GFRPSDLIKM 540 LMAQLDPLTE QQVVGIYGLQ QSTQQAEEAL SQGMEQLQQS LIETISNGSI NGSMHQMAIA 600 LNQLANLEGF VKQADNLRQQ TLHQLRRILT VRQAARCFLA IGEYKGRLRA LSSLWASRPR 660 ETLTGDENHP YQTTPEFQIV SQNPLSNNNF

Sequence ? help Back to Top

Protein Sequence Length: 690 aa Download sequence Send to blast

MGDFTGQLEA LLEWKLLGLK CYVFKSRLQE YCQKAGVTAP VYETIKQGPS HEPIFRSSVT  60
VGDTTFDSLP GFFNRKAAEQ SAAEVALMEL AKSSDLLEKS QPVQESGLCK NLMQEYAQKM  120
NYAAPLYECH RDEKPSNRTP MHYCIVDIGG IKYIGASAKT KKQAEIKAAR TALIAIQSAS  180
SPDSANSAYT VVPLKRPASS DLGINSNETA PPALKPKRKR FKKFRSNRRG KKKSSSSEQS  240
AAADIGTDTT MVQSYKNNAA AKMDDAYNSC AADLQDKINA LYDGTTTNRP TTSAAATLEM  300
FPSWPGRGSS RSGEEESTDS AASGLNNTSP ITTKLLASGH HTAAALHHIH HRPVMEDTGG  360
FQTPANYNAE KRRGPGANSD RILDAKTLRR LAQNREAARK SRLRKKAYVQ QLETSRIRLT  420
QLEQDLHRAR SQGVYLEGGG SANGNISSGG TMFDIEYARW LEDDHRHITE LRAALQTHLS  480
DGDLRVIVDG YISHYDEIFR LKGVAAKSDV FHLITGMWTT PAERCFLWMG GFRPSDLIKM  540
LMAQLDPLTE QQVVGIYGLQ QSTQQAEEAL SQGMEQLQQS LIETISNGSI NGSMHQMAIA  600
LNQLANLEGF VKQADNLRQQ TLHQLRRILT VRQAARCFLA IGEYKGRLRA LSSLWASRPR  660
ETLTGDENHP YQTTPEFQIV SQNPLSNNNF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2l2n_A	5e-31	21	107	16	103	Hyponastic leave 1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	215	222	PKRKRFKK

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011088884.1	0.0	transcription factor TGA9 isoform X2
Refseq	XP_020552198.1	0.0	transcription factor TGA9 isoform X1
Swissprot	Q93XM6	1e-163	TGA9_ARATH; Transcription factor TGA9
TrEMBL	S8E6U8	0.0	S8E6U8_9LAMI; Uncharacterized protein
STRING	XP_006424250.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3683	23	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-155	bZIP family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]