PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

NF-YB

Protein Properties

Length: 222aa MW: 25355.1 Da PI: 5.6347

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS71528.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	178.2	7.8e-56	52	147	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +eqdrflPianv+rimkkv+P+n+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd+lwa+ tlGfedyv+plk+yl+kyr+legek EPS71528.1 52 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDILWAIMTLGFEDYVNPLKIYLTKYRDLEGEK 147 89*******************************************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	6.3E-53	48	172	IPR009072	Histone-fold
SuperFamily	SSF47113	3.88E-40	54	165	IPR009072	Histone-fold
Pfam	PF00808	3.4E-28	57	121	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.3E-19	85	103	No hit	No description
PROSITE pattern	PS00685	0	88	104	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	2.3E-19	104	122	No hit	No description
PRINTS	PR00615	2.3E-19	123	141	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MKRKREDNTT SSTNEEEEDQ QIPFAETPSP IDANDNNNNS NGGGRATNSS SKEQDRFLPI 60 ANVGRIMKKV IPGNGKISKD AKETVQECVS EFISFVTGEA SDKCQREKRK TINGDDILWA 120 IMTLGFEDYV NPLKIYLTKY RDLEGEKLNL PKQHQQQQQQ QQRMMMLQQH DQNSLGMAGV 180 YSSQPSFLVN DHQQQFPPIR FSQNSTFQLS LLPHQDHVDD HL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	8e-45	52	142	2	92	Transcription factor HapC (Eurofung)
4g92_B	8e-45	52	142	2	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099714.1	1e-80	nuclear transcription factor Y subunit B-7
Swissprot	Q9SIT9	8e-67	NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBL	S8E6Q3	1e-165	S8E6Q3_9LAMI; Uncharacterized protein
STRING	cassava4.1_024313m	1e-69	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G13570.1	5e-65	nuclear factor Y, subunit B7

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]