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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS71480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | C2H2 | ||||||||
Protein Properties | Length: 183aa MW: 19743.2 Da PI: 8.158 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00026 | 111 | 133 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F+++ L H tH EPS71480.1 111 FECSSCKKVFNSHQALGGHRATH 133 89**************9999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.37 | 18 | 40 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 3.36E-8 | 19 | 40 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 20 | 40 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.9E-7 | 20 | 41 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.36E-8 | 106 | 133 | No hit | No description |
Pfam | PF13912 | 7.0E-10 | 111 | 134 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.699 | 111 | 138 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.19 | 111 | 133 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 113 | 133 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MVSRPRNSRR PDAPSITSPC PECYRTFWSW KALFGHMRCH PTRQYRGMNP PENFRRRRRL 60 GKAPVEDEEE FTEEDHELAS CLLLLTNGSG EETAAVGPAS SGAVTQSSSG FECSSCKKVF 120 NSHQALGGHR ATHKNVKGCY AIGCCSSAAA GEPTSPIDLN LSAADGRSFI GGGGLILDLK 180 LGL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022895992.1 | 5e-53 | zinc finger protein ZAT3-like | ||||
Refseq | XP_022895993.1 | 5e-53 | zinc finger protein ZAT3-like | ||||
Swissprot | O65499 | 7e-46 | ZAT3_ARATH; Zinc finger protein ZAT3 | ||||
TrEMBL | S8CX52 | 1e-133 | S8CX52_9LAMI; Uncharacterized protein | ||||
STRING | EOX97446 | 5e-50 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6385 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35280.1 | 2e-43 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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