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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS71438.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | C3H | ||||||||
Protein Properties | Length: 452aa MW: 47911 Da PI: 8.2584 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36 | 1.2e-11 | 51 | 76 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++++tG+C yG rC+F+H++ EPS71438.1 51 DEPDCIYYLKTGFCGYGKRCRFNHPR 76 6899********************96 PP | |||||||
2 | zf-CCCH | 37.1 | 5.2e-12 | 98 | 122 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+++++tG Ck+G++Ck++H++ EPS71438.1 98 QPVCQYYMKTGLCKFGATCKYHHPK 122 689********************96 PP | |||||||
3 | zf-CCCH | 36.7 | 7.1e-12 | 143 | 168 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+CkyG +CkF+H++ EPS71438.1 143 GEKECSYYVKTGFCKYGVTCKFHHPQ 168 7899********************97 PP | |||||||
4 | zf-CCCH | 37.6 | 3.7e-12 | 298 | 324 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++ rtG CkyG++Ck++H++ EPS71438.1 298 PGQPICQYYIRTGDCKYGATCKYHHPQ 324 5789*********************97 PP | |||||||
5 | zf-CCCH | 33.6 | 6.5e-11 | 346 | 370 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C++++++G C++G++CkF H++ EPS71438.1 346 APVCSHYSQNGVCRFGPSCKFDHPM 370 589********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 9.9E-5 | 49 | 76 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.493 | 49 | 77 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.8E-9 | 51 | 76 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-6 | 53 | 78 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.2E-5 | 55 | 76 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-6 | 95 | 122 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.925 | 95 | 123 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-6 | 98 | 123 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-9 | 98 | 122 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-4 | 100 | 122 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-5 | 141 | 168 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.361 | 141 | 169 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.2E-9 | 143 | 168 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-6 | 143 | 169 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 147 | 167 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.6E-6 | 297 | 324 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.723 | 297 | 325 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-8 | 299 | 324 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.23E-6 | 300 | 325 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-5 | 302 | 325 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.36E-6 | 340 | 369 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.6E-7 | 343 | 370 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.009 | 343 | 371 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.1E-8 | 346 | 370 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-5 | 348 | 369 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MERYGGTQSI DVVPVDPVEE WVTPGGETGL EEPMWQLGLG SGFQSYPERP DEPDCIYYLK 60 TGFCGYGKRC RFNHPRDRSS AMGPFRSGGG DYPERVGQPV CQYYMKTGLC KFGATCKYHH 120 PKHGVGSSAP VTLNIYGWPL RPGEKECSYY VKTGFCKYGV TCKFHHPQPA AVQHVPDATT 180 TAIYHPTAPV QSSQQYGVIQ GNWPRPAILP AASYIPGSYG PPMIFPVPGW TPYPAPPPTS 240 PGAQPAVGAA GAIYGIGPLS SPSAYPAVAG PYISIPGGGG GASSSNKMES SLGFPKRPGQ 300 PICQYYIRTG DCKYGATCKY HHPQEFIAPK ANFVLSPMGL PLRPGAPVCS HYSQNGVCRF 360 GPSCKFDHPM RSLSYSPSAS SLTDMPVAPY PVGSTSATLA PSSSSSDLSP ETALLAAGGG 420 GHQRDTATAS FPPQVSSMNI SSDSVGSIFS RG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012858954.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 34-like | ||||
Swissprot | Q84W91 | 1e-137 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | S8E6I7 | 0.0 | S8E6I7_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.G00186.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2412 | 24 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 1e-111 | C3H family protein |
Publications ? help Back to Top | |||
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