![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EPS71422.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 255aa MW: 28024.7 Da PI: 8.6931 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 111.3 | 4.9e-35 | 49 | 106 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 v YkeClkNhAaslGghavDGCgEfmps+ ++ +++++lkCaACgCHRnFHRre+++ EPS71422.1 49 VVAYKECLKNHAASLGGHAVDGCGEFMPSPATNpADPTSLKCAACGCHRNFHRREPDD 106 589****************************999*********************876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.9E-29 | 50 | 104 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.383 | 52 | 103 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.9E-31 | 52 | 103 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-24 | 52 | 111 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 4.78E-16 | 163 | 235 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.2E-28 | 171 | 236 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.0E-22 | 174 | 231 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 255 aa Download sequence Send to blast |
MELTANSTVK TPEAESQTPT GIHLPESQTP FSNGLLKRHA PLHLHHPVVV AYKECLKNHA 60 ASLGGHAVDG CGEFMPSPAT NPADPTSLKC AACGCHRNFH RREPDDALAP PMLEFRPLHR 120 HHPPPLENSG GSPNDSPSPP PISSAYYPSA PHILMALSHG GTPISAVCPG PISRKRFRTK 180 FSQDQKEKML ELAEKLEWRM QRRDEYSINE FCNRIGVDKN VFKVWMHNNK NNFTKKNPTP 240 PSAGEGTNKL GSPSS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-20 | 173 | 232 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011085755.1 | 3e-94 | zinc-finger homeodomain protein 9 | ||||
Swissprot | Q9LXG0 | 3e-67 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | S8EFN4 | 0.0 | S8EFN4_9LAMI; Uncharacterized protein | ||||
STRING | XP_008379353.1 | 3e-79 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1088 | 24 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G15210.1 | 2e-51 | homeobox protein 30 |
Publications ? help Back to Top | |||
---|---|---|---|
|