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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS71405.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | LBD | ||||||||
Protein Properties | Length: 107aa MW: 12069.9 Da PI: 8.2025 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 142.1 | 1.8e-44 | 5 | 103 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC +dC++apyfp e+p+kfa vhk+FGa nv+kll++l +++reda+ssl+yeAear+rdPvyG+vg i+ lq+q+e+l++el+++++ EPS71405.1 5 PCAACKFLRRKCLPDCIYAPYFPPEEPQKFASVHKIFGAGNVSKLLRELLPHQREDAVSSLAYEAEARVRDPVYGCVGAITFLQRQVERLQKELDAANA 103 7*********************************************************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.39 | 4 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-42 | 5 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
SYNSPCAACK FLRRKCLPDC IYAPYFPPEE PQKFASVHKI FGAGNVSKLL RELLPHQRED 60 AVSSLAYEAE ARVRDPVYGC VGAITFLQRQ VERLQKELDA ANADLIR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-61 | 3 | 107 | 9 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-61 | 3 | 107 | 9 | 113 | LOB family transfactor Ramosa2.1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022893025.1 | 8e-69 | LOB domain-containing protein 25-like | ||||
Refseq | XP_022893026.1 | 8e-69 | LOB domain-containing protein 25-like | ||||
Refseq | XP_022893027.1 | 8e-69 | LOB domain-containing protein 25-like | ||||
Swissprot | Q9FML4 | 3e-66 | LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES | ||||
TrEMBL | S8CX02 | 1e-72 | S8CX02_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | VIT_17s0000g09010.t01 | 2e-68 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63090.4 | 1e-68 | LBD family protein |
Publications ? help Back to Top | |||
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