PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS70917.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family HSF
Protein Properties Length: 344aa    MW: 39557 Da    PI: 4.2486
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS70917.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.31.6e-35141062103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k ye+++de++++liswse+++sfv++de++f++++LpkyFkh nf+SFvRQLn+YgF+kv++++         w+F+++ F  g+k+ll++i 
    EPS70917.1  14 FLVKCYEMVSDESTNDLISWSESKDSFVIYDESRFSSQLLPKYFKHGNFSSFVRQLNIYGFRKVDTDR---------WQFANEAFVSGQKHLLRNIT 101
                   9*****************************************************************99.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
    EPS70917.1 102 RRKQQ 106
                   **997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.09E-339103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.3E-5210103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.1E-3611103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.3E-3014103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-181437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-185264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-186577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MVKSLENGIS LPPFLVKCYE MVSDESTNDL ISWSESKDSF VIYDESRFSS QLLPKYFKHG  60
NFSSFVRQLN IYGFRKVDTD RWQFANEAFV SGQKHLLRNI TRRKQQQLQS SSSSQRKSLK  120
EEIDELPPQP SEENDDKRAA LWKEVEILKT DKNALTQQLK KLRQHQQNSQ SKVLLLTDQL  180
NGMEKNQQQM LSFIVMVMQR PEFILQFVQT KENGWHLAEN ANANKLSEVT DDCVSSSPSP  240
SPPPDGTIVP YQPPNSLEAP PPQDSMDLDL DLDLDLDFSS YELRDLLDDS DFFTGLNEER  300
LNSLNLDFPT AENNPEKLLL ADAPENDEML DRLLSWDPSE DDDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-251010325129Heat shock factor protein 1
5d5v_B6e-251010325129Heat shock factor protein 1
5d5v_D6e-251010325129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070552.11e-126heat stress transcription factor A-8
TrEMBLS8EEE70.0S8EEE7_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.E00498.1.p1e-122(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122352222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.19e-68heat shock transcription factor A8
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]