PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS70696.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ZF-HD
Protein Properties Length: 242aa    MW: 26906.4 Da    PI: 8.6979
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS70696.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer110.31e-3447103358
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                   v+YkeClkNhAa+lGgha+DGCgEfmps++++ +++++lkCaACgCHRnFHRre++
   EPS70696.1  47 VVTYKECLKNHAAALGGHAIDGCGEFMPSPNSNpAEPTSLKCAACGCHRNFHRREPD 103
                  589*****************************99********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.9E-2948102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-2348104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.0E-3049101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.68250101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.24E-16169240IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-27173241IPR009057Homeodomain-like
TIGRFAMsTIGR015652.2E-23179236IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
PETEIETPTR SPTRKLTPFV NGVLKRHAPP PLPGIHHLGG HHHHPVVVTY KECLKNHAAA  60
LGGHAIDGCG EFMPSPNSNP AEPTSLKCAA CGCHRNFHRR EPDDLLPGGE TPALEYHPLN  120
RHHPPPQLHS ENNSPSPPPI SSSYYNPSAP HALLALNHDA SNPTPEHSPR IPGSGGFSRK  180
RFRTKFTQFQ KDKMLELAEK VGWKMQKRDE DLIAQFCCDI GVDKAVFRVW MHNNKNTFGK  240
KD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-201782371675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085755.13e-90zinc-finger homeodomain protein 9
SwissprotQ9LXG01e-61ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLS8D0151e-179S8D015_9LAMI; Uncharacterized protein (Fragment)
STRINGevm.model.supercontig_140.558e-82(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.11e-61homeobox protein 30
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]