PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS70603.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C3H
Protein Properties Length: 440aa    MW: 48203.4 Da    PI: 7.8952
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS70603.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.43.3e-10107129325
                 S---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                 ++lC+++ + GtCk+G++CkF H
  EPS70603.1 107 EKLCNHWVQQGTCKFGESCKFLH 129
                 579******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.562348IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.0372349IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-7104132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793104132IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5106131IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-7107129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-8108130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.102.1E-44131434IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003204.6E-6136175IPR001680WD40 repeat
SuperFamilySSF509788.06E-47137435IPR017986WD40-repeat-containing domain
PfamPF004001.3E-4139175IPR001680WD40 repeat
PROSITE profilePS5029421.067143345IPR017986WD40-repeat-containing domain
PROSITE profilePS5008214.084143184IPR001680WD40 repeat
PROSITE patternPS006780162176IPR019775WD40 repeat, conserved site
PRINTSPR003201.2E-6162176IPR020472G-protein beta WD-40 repeat
SMARTSM0032061215252IPR001680WD40 repeat
SMARTSM003208.0E-4259296IPR001680WD40 repeat
PfamPF004000.039264296IPR001680WD40 repeat
PROSITE profilePS5008211.478266305IPR001680WD40 repeat
PRINTSPR003201.2E-6283297IPR020472G-protein beta WD-40 repeat
SMARTSM003201.3E-5299336IPR001680WD40 repeat
PfamPF004003.1E-4301335IPR001680WD40 repeat
PROSITE profilePS500829.205306345IPR001680WD40 repeat
PRINTSPR003201.2E-6323337IPR020472G-protein beta WD-40 repeat
SMARTSM003200.45340383IPR001680WD40 repeat
SMARTSM003206.6397434IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MDVDGGRRVF NRMGPSASTD NGSKQQKVCF HWRQGKCTRF PCPFLHSELP TASNGKRTNQ  60
GIGAEDNYRG GIRRSGNYNF SNSSSTWSRA NAQQSASTGR TYVKKTEKLC NHWVQQGTCK  120
FGESCKFLHQ WSSGDSFSLL APLEGHQQVV TGIALPSGSD KLYTGSQDET VRVWDCQSGQ  180
VAGVIKLEGA IGCLLSEGPW VFVGLANLVK AWNIQTNTDL SLNGPIGQVY SLVIGNDLLF  240
AATQEGTILA WRFNVAANTF EPAASLKGHT LAVVTLVVGG SRLYSGSMDH SIRVWSLETL  300
QCVQTLSGHT DVVMSVLCWD QFLLSASLDK TVKIWAATES GSLEVTYTHT EEHGILTLCG  360
MHDSDSKPVL FCSCNDNCIR IYDLPSSDVF FRILSIRFSD RGKIFAKKEV RAVQYGPGGL  420
FFTGDGCGQV RVWKWCSEPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A1e-211403878325Tako8
6g6n_A1e-211403878325Tako8
6g6n_B1e-211403878325Tako8
6g6n_C1e-211403878325Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076248.10.0zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ10.0C3H63_ARATH; Zinc finger CCCH domain-containing protein 63
TrEMBLS8E4C30.0S8E4C3_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.F00387.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28842134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.20.0C3H family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]