PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS70535.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | TCP | ||||||||
Protein Properties | Length: 124aa MW: 14613.5 Da PI: 12.0488 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 103.2 | 4.4e-32 | 3 | 124 | 3 | 129 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.kaaksaakskks 100 +kkdrhsk+ T +g+RdRR+Rls+++aa+fF Lqd LGf ++s t++WL++ + ai +l +++ +++ +++ ss ++++++ +aa++aa + ++ EPS70535.1 3 KKKDRHSKVNTLRGPRDRRMRLSVDVAAKFFRLQDLLGFHRPSATLDWLIKTSADAIGDLQRQQEQQQ----PSRLSSPIGKEEEEeQAAAAAAVEGRR 97 79*************************************************************44444....223333333333331334444455555 PP TCP 101 qksaasalnlakesrakarararertrek 129 +++ + + +esr++ar+rarert++k EPS70535.1 98 RRRRR--RWVGRESRERARERARERTSQK 124 55555..89999**************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.9E-28 | 3 | 124 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.387 | 4 | 62 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.284 | 107 | 124 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
KKKKKDRHSK VNTLRGPRDR RMRLSVDVAA KFFRLQDLLG FHRPSATLDW LIKTSADAIG 60 DLQRQQEQQQ PSRLSSPIGK EEEEEQAAAA AAVEGRRRRR RRRWVGRESR ERARERARER 120 TSQK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 95 | 102 | RRRRRRRR |
2 | 96 | 102 | RRRRRRR |
3 | 109 | 119 | RERARERARER |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022884934.1 | 2e-25 | transcription factor CYCLOIDEA-like | ||||
TrEMBL | S8CUR8 | 8e-81 | S8CUR8_9LAMI; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2482 | 22 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 1e-18 | TCP domain protein 12 |
Publications ? help Back to Top | |||
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