PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS70368.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

BBR-BPC

Protein Properties

Length: 241aa MW: 26780.1 Da PI: 9.7183

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS70368.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	303.7	6.5e-93	1	241	32	301
GAGA_bind 32 iaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreee 130 +aerda+i+ernla+sekkaa+aerdma lqrd+a++ern+a++erdn+l +s+ +++p ++ g+k++++++q ++ e + EPS70368.1 1 MAERDAAIQERNLAISEKKAAIAERDMAILQRDSAISERNNAIIERDNALHFRS---TSTINTNP----SSTGAKHVHHIHQ----------YDEGEDD 82 78********************************************976544...44444554....4567888888888..........3322222 PP GAGA_bind 131 klealpieeaaeeakekkkkkkrqrakkpkekkak.kkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnG 228 ++p +++++k++k +pk + + +k +ks k+ +k+++de++ +++k++dl+ln+vs+De+t+PvPvCsCtG+lr CYkWGnG EPS70368.1 83 -AAEPP------KSHRAKRPK------EPKPPPPPpPPSRKASKSSKRANKQQEDETTVQDWKDQDLGLNQVSFDETTMPVPVCSCTGVLRPCYKWGNG 168 .11222......222222222......222222221222223334455555666688999*********************************** PP GAGA_bind 229 GWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 GWqS+CCtt++S++PLP+++++r+aRi+grKmS++af+klL++La+ G dl npvDLk+hWAkHGtn+++ti+ EPS70368.1 169 GWQSSCCTTNLSMHPLPAVPNKRHARIGGRKMSGSAFNKLLNRLASAGQDLTNPVDLKEHWAKHGTNRYITIK 241 **********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	2.5E-105	1	241	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	1.0E-88	1	241	IPR010409	GAGA-binding transcriptional activator

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009723	Biological Process	response to ethylene
GO:0005730	Cellular Component	nucleolus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MAERDAAIQE RNLAISEKKA AIAERDMAIL QRDSAISERN NAIIERDNAL HFRSTSTINT 60 NPSSTGAKHV HHIHQYDEGE DDAAEPPKSH RAKRPKEPKP PPPPPPPSRK ASKSSKRANK 120 QQEDETTVQD WKDQDLGLNQ VSFDETTMPV PVCSCTGVLR PCYKWGNGGW QSSCCTTNLS 180 MHPLPAVPNK RHARIGGRKM SGSAFNKLLN RLASAGQDLT NPVDLKEHWA KHGTNRYITI 240 K

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00540	DAP	Transfer from AT5G42520	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011083484.1	1e-113	protein BASIC PENTACYSTEINE6
Refseq	XP_011083486.1	1e-113	protein BASIC PENTACYSTEINE6
Refseq	XP_011083487.1	1e-113	protein BASIC PENTACYSTEINE6
Refseq	XP_011083489.1	1e-113	protein BASIC PENTACYSTEINE6
Refseq	XP_011083490.1	1e-113	protein BASIC PENTACYSTEINE6
Refseq	XP_011083491.1	1e-113	protein BASIC PENTACYSTEINE6
Refseq	XP_011083494.1	1e-113	protein BASIC PENTACYSTEINE6
Refseq	XP_019156134.1	1e-113	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_019156135.1	1e-113	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_019156136.1	1e-113	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_019156137.1	1e-113	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_019156138.1	1e-113	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_020551029.1	1e-113	protein BASIC PENTACYSTEINE6
Refseq	XP_020551030.1	1e-113	protein BASIC PENTACYSTEINE6
Refseq	XP_020551031.1	1e-113	protein BASIC PENTACYSTEINE6
Refseq	XP_020551032.1	1e-113	protein BASIC PENTACYSTEINE6
Refseq	XP_020551033.1	1e-113	protein BASIC PENTACYSTEINE6
Refseq	XP_020551034.1	1e-113	protein BASIC PENTACYSTEINE6
Swissprot	Q5VSA8	9e-87	BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBL	S8E3W5	1e-180	S8E3W5_9LAMI; Uncharacterized protein
STRING	Lus10012389	1e-107	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5353	23	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21240.2	2e-80	basic pentacysteine 4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]