PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

CO-like

Protein Properties

Length: 262aa MW: 29427.6 Da PI: 6.6896

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS70194.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.6	1.1e-07	11	49	5	40
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg...Htvv 40 C+ ++ + +C+ + +lC++C + +H H++v EPS70194.1 11 SCDACNAAASSVYCRADLAYLCNSCDSRIHAAahrHERV 49 7****99******************8556446665 PP
2	CCT	69.9	6.7e-24	212	255	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+k+RkFeK irY+sRKa+Ae+RpR+KGrFvk++ EPS70194.1 212 REARVLRYREKKKNRKFEKMIRYASRKAYAETRPRIKGRFVKRT 255 9*****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.296	7	51	IPR000315	B-box-type zinc finger
CDD	cd00021	2.13E-5	10	49	No hit	No description
Pfam	PF00643	1.8E-5	11	51	IPR000315	B-box-type zinc finger
Pfam	PF06203	6.5E-18	212	254	IPR010402	CCT domain
PROSITE profile	PS51017	16.549	212	254	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MLKLKNGSGV SCDACNAAAS SVYCRADLAY LCNSCDSRIH AAAHRHERVM ICASCARAPA 60 VFRSMDDPSS SLCSSCYFED SSDRRHYRPP FLTLPDNTDG EIDIKDEDDE QEAASWLLLN 120 DGNLNLDDYD SCSNFDESNN SQSNHHQDYS VPQKHCFISL GLDYEGSKTG NAYSPAALYQ 180 SSFFTSDVAK VPETSAENSG DPFSRPACVM DREARVLRYR EKKKNRKFEK MIRYASRKAY 240 AETRPRIKGR FVKRTDVHIA CS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. Does not affect flowering time.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expressed with a circadian rhythm showing a peak at dawn.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006430882.1	4e-61	zinc finger protein CONSTANS-LIKE 2
Swissprot	Q96502	2e-53	COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBL	S8CSF0	0.0	S8CSF0_9LAMI; Uncharacterized protein
STRING	XP_006430882.1	1e-60	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5248	23	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15850.1	3e-40	CONSTANS-like 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae. Mol. Biol. Evol., 2015. 32(9): p. 2284-301 [PMID:25972346]