PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS70172.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ZF-HD
Protein Properties Length: 129aa    MW: 14729.7 Da    PI: 9.5956
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS70172.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer80.71.8e-25352357
  ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                 ++ Y+eCl+NhAaslG++a+DGCgEf+ + g      +l CaACgCHRnFHR+  
   EPS70172.1  3 EYYYRECLRNHAASLGSYATDGCGEFTGA-GG----GSLSCAACGCHRNFHRKLA 52
                 678*************************9.33....59**************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.9E-22550IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.271651IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.9E-21650IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-9650IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.9E-2556128IPR009057Homeodomain-like
SuperFamilySSF466898.97E-1656128IPR009057Homeodomain-like
TIGRFAMsTIGR015651.0E-2766125IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MEEYYYRECL RNHAASLGSY ATDGCGEFTG AGGGSLSCAA CGCHRNFHRK LAADCRSTPS  60
PEPSRKKRIR TKFTSEQKEK MVGFAEGLGW KLQRIRKKEE DEIERFCSGI GITRRVFKIW  120
IHNHKTTHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-17671271875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073164.12e-54zinc-finger homeodomain protein 7-like
SwissprotA2XLF42e-33ZHD11_ORYSI; Zinc-finger homeodomain protein 11
SwissprotQ10DV52e-33ZHD11_ORYSJ; Zinc-finger homeodomain protein 11
SwissprotQ9M9S08e-33ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLS8EC702e-91S8EC70_9LAMI; Uncharacterized protein
STRINGVIT_17s0000g00810.t011e-52(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118652023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60480.17e-25homeobox protein 26
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]