PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS70170.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

C2H2

Protein Properties

Length: 347aa MW: 38990.5 Da PI: 8.7054

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS70170.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19	3.8e-06	35	57	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H EPS70170.1 35 YVCEICNQGFQRDQNLQMHRRRH 57 9*********************9 PP
2	zf-C2H2	16	3.4e-05	112	134	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ EPS70170.1 112 WVCQKCSKGYAVQSDYKAHLKTC 134 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.98E-5	32	58	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.3E-5	34	57	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0052	35	57	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.97	35	57	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	37	57	IPR007087	Zinc finger, C2H2
SMART	SM00355	160	76	106	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	66	112	139	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
NGGNSKRKRR PAGTPDPDAE VVSLSPRTLL ESDRYVCEIC NQGFQRDQNL QMHRRRHKVP 60 WKLLKRENHA PRKRVYVCPE PTCLHHDPCH ALGDLVGIKK HFRRKHSNHR QWVCQKCSKG 120 YAVQSDYKAH LKTCGTRGHS CDCGRVFSRV ESFIEHQDAC SMKRLRPDAP PVSVPMDVVE 180 ISRRPPPPPS LELQLYTGKY IAKFFLLISA NLLEEDNSAT QLQLSIGSSE IGEKSEAEEQ 240 TAVTTAAEEM MSMAMADKVY ADEARQQAKS QMAAAEEEFS EAKKLRILAQ MELEKAQALK 300 ENAAAQIGAA MAMFKCRSCM NNLRREAPSS SSSSSMELSY ISAALRD

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

NGGNSKRKRR PAGTPDPDAE VVSLSPRTLL ESDRYVCEIC NQGFQRDQNL QMHRRRHKVP  60
WKLLKRENHA PRKRVYVCPE PTCLHHDPCH ALGDLVGIKK HFRRKHSNHR QWVCQKCSKG  120
YAVQSDYKAH LKTCGTRGHS CDCGRVFSRV ESFIEHQDAC SMKRLRPDAP PVSVPMDVVE  180
ISRRPPPPPS LELQLYTGKY IAKFFLLISA NLLEEDNSAT QLQLSIGSSE IGEKSEAEEQ  240
TAVTTAAEEM MSMAMADKVY ADEARQQAKS QMAAAEEEFS EAKKLRILAQ MELEKAQALK  300
ENAAAQIGAA MAMFKCRSCM NNLRREAPSS SSSSSMELSY ISAALRD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-17	110	160	5	55	Zinc finger protein JACKDAW
5b3h_F	2e-17	110	160	5	55	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269\|PubMed:21556057, ECO:0000269\|PubMed:24039602}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by auxin. {ECO:0000269\|PubMed:24039602}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011073161.1	1e-154	protein SHOOT GRAVITROPISM 5-like
Swissprot	Q9C9X7	1e-128	IDD14_ARATH; Protein indeterminate-domain 14
TrEMBL	S8CTJ5	0.0	S8CTJ5_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_009777609.1	1e-151	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1022	24	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-114	C2H2-like zinc finger protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Arendsee ZW,Li L,Wurtele ES Coming of age: orphan genes in plants. Trends Plant Sci., 2014. 19(11): p. 698-708 [PMID:25151064] Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128]