PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

NF-YC

Protein Properties

Length: 215aa MW: 23704.7 Da PI: 4.6172

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS70111.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	177.5	1.3e-55	27	131	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 ql++fw++q ie+a+dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rsw+haeenkrrtl+k+diaaa+trtdifdflvdiv EPS70111.1 27 QLQMFWAYQrqeIEHANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTVRSWIHAEENKRRTLQKNDIAAAITRTDIFDFLVDIV 125 89**9998889********************************************************************************** PP NF-YC 97 prdelk 102 prde+k EPS70111.1 126 PRDEIK 131 *975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.37E-33	14	121	IPR009072	Histone-fold
Pfam	PF00808	4.9E-21	49	112	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.9E-37	50	127	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MESNPQQSAA GAPYPQPPYQ SLHNQQQLQM FWAYQRQEIE HANDFKNHQL PLARIKKIMK 60 ADEDVRMISA EAPILFAKAC ELFILELTVR SWIHAEENKR RTLQKNDIAA AITRTDIFDF 120 LVDIVPRDEI KDDAADLGGI VPPPDAATAG VPYYYPPIGQ PLMMPPGVDP SVYLQPAPVP 180 HSQAWPSVWQ TPAEDGSYAS GGGSSSGQAN LDGQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-54	35	127	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	105	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022852290.1	1e-103	nuclear transcription factor Y subunit C-1-like isoform X1
Swissprot	Q9SMP0	6e-87	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	S8CYK1	1e-157	S8CYK1_9LAMI; Uncharacterized protein
STRING	Migut.D01269.1.p	1e-101	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4087	21	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	6e-88	nuclear factor Y, subunit C1

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]