PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

YABBY

Protein Properties

Length: 180aa MW: 19891.5 Da PI: 8.8839

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS70015.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	167.8	7.9e-52	10	160	6	163
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas..qllaaeshldeslkeelleelkveeenlksnvekeesastsvssekls 102 +++Cyv+C+fCntilav +P l+++vtv+CGhC++l ++ + q+ ++ +h + ++++++l ++ ++ +s+s +s+++ EPS70015.1 10 DQQHLCYVRCSFCNTILAVGIPCRRLLETVTVKCGHCSNLSFLTSKSPIqmQQSPCCDH---QQ-QQQQQQLTLHQG---LCSDFKRVQSSSSPSSRI- 100 5689*********************************87655554441133344444...22.222233333332...233333444444445444. PP YABBY 103 enedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163 + + ++p++p v++PPek+ r Psaynrf+keeiqrika+nP+i hreafsaaaknWa + EPS70015.1 101 -SAEPSSPKAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARY 160 .4556789999**********************************************76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.1E-55	11	160	IPR006780	YABBY protein
SuperFamily	SSF47095	8.38E-9	104	158	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	4.1E-5	114	159	IPR009071	High mobility group box domain
CDD	cd01390	3.36E-6	121	157	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010254	Biological Process	nectary development
GO:0010582	Biological Process	floral meristem determinacy
GO:0048479	Biological Process	style development

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MEHLGCQSSD QQHLCYVRCS FCNTILAVGI PCRRLLETVT VKCGHCSNLS FLTSKSPIQM 60 QQSPCCDHQQ QQQQQQLTLH QGLCSDFKRV QSSSSPSSRI SAEPSSPKAP FVVKPPEKKH 120 RLPSAYNRFM KEEIQRIKAA NPEIPHREAF SAAAKNWARY IPGSSEASVS TTSNNAGGTS

Functional Description ? help Back to Top
Source	Description
UniProt	Regulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269\|PubMed:14729915}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00220	DAP	Transfer from AT1G69180	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002263611.1	7e-77	PREDICTED: protein CRABS CLAW isoform X2
Refseq	XP_010650015.1	8e-77	PREDICTED: protein CRABS CLAW isoform X1
Swissprot	Q76EJ0	2e-60	YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBL	S8CT48	1e-130	S8CT48_9LAMI; Uncharacterized protein
STRING	VIT_01s0011g00140.t01	4e-76	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5210	23	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69180.1	9e-57	YABBY family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]