PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS69392.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C3H
Protein Properties Length: 551aa    MW: 60500.9 Da    PI: 5.7362
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS69392.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21e-06253273526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C+ f + G C  Gd+C +aHg
  EPS69392.1 253 PCPEFKK-GSCVKGDNCEYAHG 273
                 8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.203.1E-1825181IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.91E-1628144IPR020683Ankyrin repeat-containing domain
CDDcd002042.07E-1345144No hitNo description
PfamPF127965.0E-965136IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.66369144IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00376999IPR002110Ankyrin repeat
PROSITE profilePS5008811.14104139IPR002110Ankyrin repeat
SMARTSM002484.2E-4104136IPR002110Ankyrin repeat
Gene3DG3DSA:4.10.1000.107.4E-5247274IPR000571Zinc finger, CCCH-type
SMARTSM003568.3E-6248274IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.197248275IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.869283307IPR000571Zinc finger, CCCH-type
SMARTSM0035637283306IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
SNPCDLEMEA GFQVEDDKGF PKFCTKLLEL AATDDLSGIR HEVEEMGCDI NQVGFWYARS  60
FGSNKMGFEE RNPLMIASLY GNTSVLKYII ESGKVDVNLA CGSDGATALH CAAAGGSWSS  120
LEVVKLLINA SSDVNAVTVN GKRPGDLIAP CVKSCNSSKR KTLEILLNGV VTESDREEET  180
PRGGNEKKEY PVDISLPDIN NGIYVTDEFR MYSFKVKPCC RAYSHDWTEC PFVHPGENAR  240
RRDLRKYNYS CVPCPEFKKG SCVKGDNCEY AHGVFESWLH PAQYRTRLCK DETGCARKVC  300
FFAHKPEELR PLYASSGSGV ASSPNSSCLE MSPSSPVGGG GGGLWQIAPP TLQLPGSRLK  360
AAVSARDLDL DMEFLEKIRT QRQLVDVPGM EVSSPYGGGS YDSQLLSMLQ QGLSPKFHVE  420
SPTAMQIRQQ LRASYPTPSS PTARYGGFDS RSSSNFTKRS QSFIDRGHPP KLMASKLAEW  480
SSPDGRLDWG FNGDDVNRLR KSASFGIRNG NGVASEEPDV SWVNSLVKDG GGGEGRPEWL  540
EQTYMEQEQI V
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084902.10.0zinc finger CCCH domain-containing protein 29
SwissprotQ9LUZ41e-175C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLS8EA920.0S8EA92_9LAMI; Uncharacterized protein (Fragment)
STRINGEOY177610.0(Theobroma cacao)
STRINGXP_010031206.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25582245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-167C3H family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]