PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS69386.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family TALE
Protein Properties Length: 288aa    MW: 31895.8 Da    PI: 6.399
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS69386.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.41.4e-092082422155
                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                 k +yps++++  LA+ +gL+++q+ +WF N+R ++
  EPS69386.1 208 KWPYPSEAQKVALAETTGLDQKQINNWFINQRKRH 242
                 569*****************************885 PP
2ELK41.52.7e-14162183122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELK qLlrKYsgyLgsLkqEF+
  EPS69386.1 162 ELKGQLLRKYSGYLGSLKQEFM 183
                 9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.0E-16650IPR005540KNOX1
PfamPF037906.6E-20846IPR005540KNOX1
SMARTSM012562.7E-2267120IPR005541KNOX2
PfamPF037911.2E-2074119IPR005541KNOX2
PROSITE profilePS5121311.174162182IPR005539ELK domain
PfamPF037894.5E-11162183IPR005539ELK domain
SMARTSM011882.8E-8162183IPR005539ELK domain
PROSITE profilePS5007112.843182245IPR001356Homeobox domain
SuperFamilySSF466898.98E-20184254IPR009057Homeodomain-like
SMARTSM003891.8E-13184249IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.9E-28187247IPR009057Homeodomain-like
CDDcd000864.55E-12194246No hitNo description
PfamPF059201.5E-17202241IPR008422Homeobox KN domain
PROSITE patternPS000270220243IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009934Biological Processregulation of meristem structural organization
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
SSSSSVGIKA RIMAHPHYHR LLAAYINCQK IGAPAEVVAR LEQAAAAAAA SNNNNHNDDD  60
DDNNNNDGGC CLLGEDPALD QFMEAYCEML TKYEQELSKP FKEAMIFLSK IEGQFKAITL  120
NPSSYSSSGC SDAMERNASS ENNAGVVVGG GGFIDPQAED QELKGQLLRK YSGYLGSLKQ  180
EFMKKRKKGK LPKDARQQLL DWWNRHYKWP YPSEAQKVAL AETTGLDQKQ INNWFINQRK  240
RHWKPSEDMQ FVVMDAAAAA AAAAAQPHYY LDSVLGNPFP LDISPAFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177186LKQEFMKKRK
2183187KKRKK
Functional Description ? help Back to Top
Source Description
UniProtMay have a role to play in formative events in ovule and embryo morphogenesis. Probably binds to the DNA sequence 5'-TGAC-3'.
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021889118.11e-142homeobox protein SBH1
SwissprotO222991e-127LET6_SOLLC; Homeobox protein knotted-1-like LET6
SwissprotP466081e-126HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLS8CWT20.0S8CWT2_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_009613677.11e-136(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68352433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-117KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]