PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

YABBY

Protein Properties

Length: 122aa MW: 13519.3 Da PI: 10.4558

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS68946.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	28.9	3.6e-09	2	31	32	61
YABBY 32 fkvvtvrCGhCtsllsvnlakasqllaaes 61 + +vtvrCGhC++llsvn+ q+++ ++ EPS68946.1 2 LAIVTVRCGHCSNLLSVNMGGGYQQVSEQQ 31 689****************98887776655 PP
2	YABBY	132.4	5.8e-41	30	105	95	170
YABBY 95 svssekl.senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++s ++ s+n+ ++ +pp irPPekrqrvPsaynrfi+eeiqrikasnP+ishreafs+aaknWahfP+ihfgl EPS68946.1 30 QQAS-MIqSSNRMIQSEPPPPPIRPPEKRQRVPSAYNRFIREEIQRIKASNPEISHREAFSTAAKNWAHFPHIHFGL 105 2222.22244444444445668*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	5.6E-38	30	105	IPR006780	YABBY protein
SuperFamily	SSF47095	3.01E-8	48	98	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.1E-5	53	99	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence Send to blast
MLAIVTVRCG HCSNLLSVNM GGGYQQVSEQ QASMIQSSNR MIQSEPPPPP IRPPEKRQRV 60 PSAYNRFIRE EIQRIKASNP EISHREAFST AAKNWAHFPH IHFGLENSGS KQRKAAAAGE 120 AA

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012851072.1	4e-52	PREDICTED: putative axial regulator YABBY 2
Swissprot	Q9XFB0	7e-48	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	S8CVI3	1e-84	S8CVI3_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.D02379.1.p	1e-51	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	7e-43	YABBY family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]