PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS68925.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | B3 | ||||||||
Protein Properties | Length: 141aa MW: 16192.3 Da PI: 10.023 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 104.6 | 5.3e-33 | 19 | 112 | 1 | 84 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE.....E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk.....l 84 f+kv tpsdv+k++rlv+pk++ae++ ++ ++ lt++d+ g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F+ + EPS68925.1 19 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldsAASESKGLLLTFRDPAGKSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFHraakdH 112 89***************************9966677889*************************************************544332 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.6E-42 | 10 | 129 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.44E-33 | 15 | 127 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.29E-28 | 17 | 107 | No hit | No description |
Pfam | PF02362 | 2.7E-30 | 19 | 126 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.551 | 19 | 128 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.9E-26 | 19 | 128 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
YAGAAEPESE SETEKEHMFD KVVTPSDVGK LNRLVIPKQH AEKYFPLDSA ASESKGLLLT 60 FRDPAGKSWR FRYSYWNSSQ SYVMTKGWSR FVKDKKLDAG DVVSFHRAAK DHRNRSDRLL 120 FIDWRRRPDV AIPPPATAFS I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 9e-62 | 14 | 131 | 3 | 117 | B3 domain-containing transcription factor NGA1 |
5os9_B | 9e-62 | 14 | 131 | 3 | 117 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022929873.1 | 9e-63 | B3 domain-containing protein Os03g0120900-like | ||||
Refseq | XP_022992335.1 | 9e-63 | B3 domain-containing protein Os03g0120900-like | ||||
Swissprot | O82799 | 2e-60 | NGA1_ARATH; B3 domain-containing transcription factor NGA1 | ||||
TrEMBL | S8CQC0 | 3e-99 | S8CQC0_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Bra040478.1-P | 3e-61 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2817 | 23 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 1e-60 | B3 family protein |