PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EPS68360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 82aa MW: 9678.23 Da PI: 10.398 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.3 | 3.5e-38 | 25 | 82 | 2 | 59 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 +e++l+cprC s++tkfCyynny+++qPryfCk C+ryWt+GG++rnvPvG+g+rk+k EPS68360.1 25 PERILPCPRCSSRDTKFCYYNNYNVNQPRYFCKVCQRYWTEGGTMRNVPVGAGKRKSK 82 67899***************************************************87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 3.7E-32 | 28 | 82 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 5.0E-24 | 28 | 82 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.164 | 29 | 82 | IPR003851 | Zinc finger, Dof-type |
Gene3D | G3DSA:2.20.25.10 | 8.7E-4 | 29 | 67 | No hit | No description |
PROSITE pattern | PS01361 | 0 | 31 | 67 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 82 aa Download sequence Send to blast |
EDSAITETTE VKKKKKPERK LLKKPERILP CPRCSSRDTK FCYYNNYNVN QPRYFCKVCQ 60 RYWTEGGTMR NVPVGAGKRK SK |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 11 | 23 | KKKKKPERKLLKK |
2 | 14 | 23 | KKPERKLLKK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269|PubMed:19619493}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269|PubMed:19619493}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021614753.1 | 3e-36 | cyclic dof factor 3-like | ||||
Swissprot | Q8LFV3 | 2e-35 | CDF3_ARATH; Cyclic dof factor 3 | ||||
TrEMBL | S8CNU1 | 3e-53 | S8CNU1_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | cassava4.1_007172m | 1e-35 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G47500.1 | 3e-32 | cycling DOF factor 3 |