PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS68229.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | NAC | ||||||||
Protein Properties | Length: 295aa MW: 32757.7 Da PI: 6.4997 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 92.4 | 7.5e-29 | 56 | 200 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sgyW 83 lp+G++F+P+d el+ ++L++k g++ + +e+i+++d i++++P++Lp +k++ ++++fF+k +++y +g rk+r ++ +W EPS68229.1 56 LPAGVKFDPSDVELL-DHLAAKHGGSEdldphvfI--DEFIPTIDgdegICYTHPEKLP-GAKKDGSSIHFFHKISNAYGSGPRKRRRINgqesvVVRW 150 799************.8999999999888876432..334555544455**********.556778899******************74434433567* PP NAM 84 katgkdkevlskkgelvglkktLvfy.....kgrapkgektdWvmheyrl 128 ++tg++k++ +++g+l g kk++v+y g ++k+ +++Wvmh+y++ EPS68229.1 151 HKTGRTKPIADSNGNLRGFKKIMVLYssskgGGGRSKPDRCNWVMHQYHI 200 **************************7665436777889*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-30 | 41 | 206 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 24.638 | 56 | 215 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-12 | 57 | 200 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MRCRAWLIDS RGLAKKVKDA GLPQAYQIKD CGANRRCPNC HYLIDNSDVS DDWPGLPAGV 60 KFDPSDVELL DHLAAKHGGS EDLDPHVFID EFIPTIDGDE GICYTHPEKL PGAKKDGSSI 120 HFFHKISNAY GSGPRKRRRI NGQESVVVRW HKTGRTKPIA DSNGNLRGFK KIMVLYSSSK 180 GGGGRSKPDR CNWVMHQYHI GKSEDESTGE YVPSTPPDCC FHSGDGVCFC CEMLGTHTEE 240 GLHQRVGIGN AAASCGIGDL DDLELDSQPD FHLNKISDIH LYHVLQDLQF DWLDR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 134 | 138 | RKRRR |
2 | 135 | 139 | KRRRI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011097382.1 | 1e-112 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Swissprot | Q6NQK2 | 2e-68 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | S8CM48 | 0.0 | S8CM48_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.K01409.1.p | 1e-102 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8175 | 22 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01600.1 | 2e-72 | NAC domain containing protein 44 |