PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS68207.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ERF
Protein Properties Length: 402aa    MW: 44914.7 Da    PI: 4.9517
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS68207.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.1e-19120169255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  EPS68207.1 120 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDEEARKIRG 169
                 69*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-32120178IPR001471AP2/ERF domain
PROSITE profilePS5103223.894120177IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-22120178IPR016177DNA-binding domain
CDDcd000181.28E-33120179No hitNo description
SMARTSM003804.1E-39120183IPR001471AP2/ERF domain
PRINTSPR003671.2E-11121132IPR001471AP2/ERF domain
PfamPF008475.1E-12121169IPR001471AP2/ERF domain
PRINTSPR003671.2E-11143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MCGGAIISDL IPPTSVSSRR LTADLLWGTD AASHFRKKKS PGNYGSKPAR NHPVIDLDED  60
FEADFQDFKD HSDAEDEINA KRPFGLVPPK SSTFTGLRSH DSADSDEDCD KSSKRKRKNQ  120
YRGIRQRPWG KWAAEIRDPR KGVRVWLGTF NTAEEAARAY DEEARKIRGK KAKVNFPEDC  180
PPAASRRSVN KARSSTKLQQ QQEIQDSVRP PVTESMDLVN MLNNNYVDSL SFLEENIEMK  240
PKHFNDINPD AASDLGRKNL PPPDAATHPY LSSDQGSNSF DCLNVSWVNN CAAKTPEITS  300
VLSSVVEGDR AQYIDDGDPV FGGKLNLHIH ERNADKQQQL PDDLTTAFEQ PPQMKLFQNS  360
YLDNNWEASI DAFLNGEAIP DSGNSVDLWS FEDVLDLPGC VF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-211201791474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072679.11e-156ethylene-responsive transcription factor RAP2-12-like isoform X1
TrEMBLS8E7160.0S8E716_9LAMI; Uncharacterized protein
STRINGMigut.I01124.1.p1e-143(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.31e-54related to AP2 12
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]