PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS68198.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

TCP

Protein Properties

Length: 329aa MW: 35669.4 Da PI: 5.8545

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS68198.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	109.2	6e-34	54	192	2	132
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssaseceaesssssasnsss 87 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWLl++a ai+el+ + ++ss++++++ EPS68198.1 54 SGGKDRHSKVLTSKGLRDRRVRLSVSTAIQFYDLQDRLGVDQPSKAVEWLLRAASSAIDELPPIsglfpgtpkqlsdE----------KRSSTGGSDQV 142 689************************************************************988887544433330..........33333332333 PP TCP 88 g...............................kaaksaakskksqksaasalnlakesrakarararertrekmri 132 g ++++s r +++ek ++ EPS68198.1 143 GfdspevqmdagggdlsfsqqasesskcsgrgRSESSR-I-------------------------RRAKQKEKENN 192 34444332222222221111111112222221111111.1.........................12222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.1E-36	55	196	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	32.112	56	114	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
LGEELKTMNE QFQDEEEDGE TRSNRDAAVA VAASDVGRLY NFPSSRIVRV SRASGGKDRH 60 SKVLTSKGLR DRRVRLSVST AIQFYDLQDR LGVDQPSKAV EWLLRAASSA IDELPPISGL 120 FPGTPKQLSD EKRSSTGGSD QVGFDSPEVQ MDAGGGDLSF SQQASESSKC SGRGRSESSR 180 IRRAKQKEKE NNESLNHVVS RTTSFTELLS GGGGGGPNES NIFCKSPTPM DYFVTRAGQI 240 QLGGNHFNPL FGVAPAEMQQ QQQRQFFVTD QLAPVVNNLS FSISPGLNGL NRGTLQSNSS 300 PPSFFIGATP SAEFLNAYDA SRLQLFYGD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	8e-23	61	115	1	55	Putative transcription factor PCF6
5zkt_B	8e-23	61	115	1	55	Putative transcription factor PCF6
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096599.1	1e-101	transcription factor TCP2-like
Refseq	XP_011096600.1	1e-101	transcription factor TCP2-like
Refseq	XP_020554008.1	1e-101	transcription factor TCP2-like
TrEMBL	S8DY37	0.0	S8DY37_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.M00891.1.p	3e-99	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2464	22	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18390.2	2e-40	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]