PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS67918.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | B3 | ||||||||
Protein Properties | Length: 139aa MW: 16051.6 Da PI: 8.4976 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.9 | 3.8e-18 | 36 | 126 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 f+k +++s+v++ +l lpkkf+e+h+ + ++ ++l +e+g++++ ++ gry l++GW++F +++L gD+++F+l++ +f +v+++r+ EPS67918.1 36 FVKFMLHSNVGQGFWLHLPKKFCEAHMPD--HDTNVSLVNEWGKEYRATFL----LGRYGLSAGWRGFSISHRLLKGDILIFHLIQPCKF--KVHIVRA 126 89************************755..5668***************4....44567*************************98888..8888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.96E-24 | 30 | 127 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-21 | 31 | 127 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.60E-25 | 34 | 125 | No hit | No description |
Pfam | PF02362 | 2.4E-15 | 36 | 126 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.7E-19 | 36 | 127 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.731 | 36 | 127 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
KRTRFFDLYD DDEARYSVIE RAGELLSGLE NDLPHFVKFM LHSNVGQGFW LHLPKKFCEA 60 HMPDHDTNVS LVNEWGKEYR ATFLLGRYGL SAGWRGFSIS HRLLKGDILI FHLIQPCKFK 120 VHIVRANKSD VMGAALCLM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088278.1 | 2e-73 | B3 domain-containing protein At5g42700 isoform X2 | ||||
TrEMBL | S8DXB4 | 2e-99 | S8DXB4_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Solyc01g108130.2.1 | 8e-63 | (Solanum lycopersicum) | ||||
STRING | PGSC0003DMT400066321 | 7e-63 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1628 | 23 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 6e-36 | B3 family protein |
Publications ? help Back to Top | |||
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