PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS67869.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

bZIP

Protein Properties

Length: 326aa MW: 36705.3 Da PI: 7.0114

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS67869.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.1	1.2e-10	45	89	4	48
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 k rr+++NReAAr+sR+RKka+i++Le + L + ++Lk++ EPS67869.1 45 QKTLRRLAQNREAARKSRLRKKAYIQQLESSRQRLAQLEQDLKER 89 6889**************************999999999999976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.0E-8	37	88	No hit	No description
SMART	SM00338	3.0E-5	42	98	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.703	44	89	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.6E-8	46	89	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.66E-7	46	90	No hit	No description
PROSITE pattern	PS00036	0	49	64	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.8E-28	129	202	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
VADHGAQTET STDTTDDKNQ ILGAQNGRLM ASYSPGQSKS SIEDQKTLRR LAQNREAARK 60 SRLRKKAYIQ QLESSRQRLA QLEQDLKERR HQGCLPTSGF AGDQIHGGVA GNAFDVDYAQ 120 WLEEHQRLIH DMRSALNFHA GDEELQLLID SVMSHYEELF RLKNSAGRND IFHILSGMWK 180 SPAERCFMWL GGFRSSDILK ILGNQIEPLS EQQLVGICNL QQSSQQAEDA LTQGMEALQQ 240 SLMEALSSNT FGSSNSDYMD QMSIALSKLA ALENFLHQAD LLRQQTLQQL QRILTTRQAA 300 YALLAINNCK SRLRALSSLW LARPKE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022882012.1	1e-165	transcription factor HBP-1b(c38)-like isoform X1
Swissprot	P23923	1e-135	HBP1B_WHEAT; Transcription factor HBP-1b(c38)
Swissprot	Q41558	1e-135	HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBL	S8CL75	0.0	S8CL75_9LAMI; Uncharacterized protein (Fragment)
STRING	POPTR_0008s11710.1	1e-156	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA820	23	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	1e-113	bZIP family protein

Publications ? help Back to Top
Tabata T,Nakayama T,Mikami K,Iwabuchi M HBP-1a and HBP-1b: leucine zipper-type transcription factors of wheat. EMBO J., 1991. 10(6): p. 1459-67 [PMID:2026143] Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]