PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS67815.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family GRAS
Protein Properties Length: 516aa    MW: 56054.3 Da    PI: 4.5636
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS67815.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS430.51.3e-1311465161374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfshlta 98 
                 lv++L++cAea++++d+ela+al++++  la++++ +m+++aayf+eALa+r+++  +      p+ +++  +s  +  al++ f+e++P+lkf+h+ta
  EPS67815.1 146 LVHTLVACAEAIQQEDAELAEALVKNIGFLAASQAGAMRKVAAYFAEALARRIYGLRP------PAAAAAAGDSGFTDDALQMnFYEACPYLKFAHFTA 238
                 689****************************************************222......22222223344444455555*************** PP

        GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.vakrledleleeLrv 196
                 NqaIlea++g++rvH+iDf ++qG+QWpaLl+aLa Rp+gpp +R+Tgv     +s++   e+g+rLa++Ae ++v+f+++ + va+++++l+ ++L+v
  EPS67815.1 239 NQAILEAFAGKSRVHVIDFTMKQGMQWPALLHALALRPGGPPAVRLTGVRY---SSRDGSAEIGWRLARLAEDVEVEFKYEEItVADSIAELDSSMLDV 334
                 **************************************************9...5899***********************996777************ PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.......eerikvEre 288
                 ++gEa+aVn+v++lhrll++++s++     vLklv++l+P++++vveqea+h+++ Fl+rf eal+yys+lfdsle+++++++       +e++ + ++
  EPS67815.1 335 REGEAVAVNSVFELHRLLSRPGSIDG----VLKLVRELKPEILTVVEQEANHGGNIFLDRFNEALHYYSTLFDSLESGAAAAAaadgsatDEDRLMTEV 429
                 ******************88888888....*********************************************988554444455677899999999 PP

        GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +lgr+i+++vacega+r+erhetl++Wr+r+++ GF+pv+l+++++kqa lll  ++ +dgyrvee++g+l+lgW++rpL+++SaW+
  EPS67815.1 430 YLGRQICDIVACEGADRVERHETLAQWRARFGSRGFTPVRLGSNVYKQAILLLGLFAgGDGYRVEENDGCLMLGWHTRPLIATSAWK 516
                 9*************************************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120414.4E-26268IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011295.1E-24276No hitNo description
PROSITE profilePS5098564.355120495IPR005202Transcription factor GRAS
PfamPF035144.6E-129146516IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
FDEAFAVLGY NVKSSDMAEV AEKIQQLDEA MGSFEREGLS QLLASDAVHY NPSDLCSWLE  60
SMISGLNPLS GFESSPDPFL DSSTASVNSC PPRIDLDFGS DLISIPGEAI YPRPPAKRAR  120
YPVSVEPPPA AARSLLVDSQ ENGIRLVHTL VACAEAIQQE DAELAEALVK NIGFLAASQA  180
GAMRKVAAYF AEALARRIYG LRPPAAAAAA GDSGFTDDAL QMNFYEACPY LKFAHFTANQ  240
AILEAFAGKS RVHVIDFTMK QGMQWPALLH ALALRPGGPP AVRLTGVRYS SRDGSAEIGW  300
RLARLAEDVE VEFKYEEITV ADSIAELDSS MLDVREGEAV AVNSVFELHR LLSRPGSIDG  360
VLKLVRELKP EILTVVEQEA NHGGNIFLDR FNEALHYYST LFDSLESGAA AAAAADGSAT  420
DEDRLMTEVY LGRQICDIVA CEGADRVERH ETLAQWRARF GSRGFTPVRL GSNVYKQAIL  480
LLGLFAGGDG YRVEENDGCL MLGWHTRPLI ATSAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-6714151513377Protein SCARECROW
5b3h_D2e-6714151513377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070609.10.0DELLA protein GAI1
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLS8CM420.0S8CM42_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.E00445.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21262462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]