PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS67750.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

WRKY

Protein Properties

Length: 415aa MW: 44858.7 Da PI: 4.8894

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS67750.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.8	6.9e-31	179	238	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt+a +Cpv+k+v+rs ed +++++tYeg+Hnh+ EPS67750.1 179 MNDGCQWRKYGQKIAKGNPCPRAYYRCTMApSCPVRKQVQRSVEDMSILITTYEGNHNHS 238 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.5E-31	164	240	IPR003657	WRKY domain
SuperFamily	SSF118290	2.35E-27	171	240	IPR003657	WRKY domain
PROSITE profile	PS50811	28.311	174	240	IPR003657	WRKY domain
SMART	SM00774	2.9E-36	179	239	IPR003657	WRKY domain
Pfam	PF03106	7.0E-27	180	237	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006952	Biological Process	defense response
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
IESTKMEMED VMEENQRLKM YLDKISEDYR ALQVKYKDMV EPKEAGKGEE EIDDLISLNL 60 GRSFSSGDKQ KEDGRKNPAK NGDEEEEEEE EEEEEGLTLG LDCKFENVKK KKKKSTPSGS 120 QENSAEDLKE EVLAGDTWPE KTEKNGGAAA AGDDDEILQQ NPNKRARVSV RVRCDTPTMN 180 DGCQWRKYGQ KIAKGNPCPR AYYRCTMAPS CPVRKQVQRS VEDMSILITT YEGNHNHSLP 240 IPATGMASTT SAAASMLLSG SSSTGSSTSA TLNGLNFYMS DSSRPKPYYL PHSSISSSTT 300 CPTITLDLTS SGSAPSSSAA CRIGNGFPNR YPSGNLNFGS METNTVPVSW NGNGLMSHVA 360 ASHQAMNKNN GSLAFGSQAD ETLFRIAAAT KAITSDPNFQ SALAAALTSI ISSGG

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

IESTKMEMED VMEENQRLKM YLDKISEDYR ALQVKYKDMV EPKEAGKGEE EIDDLISLNL  60
GRSFSSGDKQ KEDGRKNPAK NGDEEEEEEE EEEEEGLTLG LDCKFENVKK KKKKSTPSGS  120
QENSAEDLKE EVLAGDTWPE KTEKNGGAAA AGDDDEILQQ NPNKRARVSV RVRCDTPTMN  180
DGCQWRKYGQ KIAKGNPCPR AYYRCTMAPS CPVRKQVQRS VEDMSILITT YEGNHNHSLP  240
IPATGMASTT SAAASMLLSG SSSTGSSTSA TLNGLNFYMS DSSRPKPYYL PHSSISSSTT  300
CPTITLDLTS SGSAPSSSAA CRIGNGFPNR YPSGNLNFGS METNTVPVSW NGNGLMSHVA  360
ASHQAMNKNN GSLAFGSQAD ETLFRIAAAT KAITSDPNFQ SALAAALTSI ISSGG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-22	166	240	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071617.1	1e-142	probable WRKY transcription factor 72
Swissprot	A0A3Q7GFB5	1e-115	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	S8CLY4	0.0	S8CLY4_9LAMI; Uncharacterized protein (Fragment)
STRING	Gorai.008G191200.1	1e-118	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1945	24	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	2e-55	WRKY DNA-binding protein 72

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]