PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS67642.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family B3
Protein Properties Length: 451aa    MW: 50649.1 Da    PI: 8.6745
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS67642.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.53.6e-16431231399
                 TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 s+ l+lp  fae+ ++    ++ ++led+sg +W+v l  r ++g+ ++ +GW +F +++ +keg+f+vF ++++  f  vv++f +
  EPS67642.1  43 SKVLYLPSAFAETVMHL--AGQVVQLEDSSGLRWDVLL--RFTGGSLFFDRGWCKFFSDHSIKEGEFLVFDFVKKGHF--VVHIFGT 123
                 3459*******999755..4558***************..777778*************************8875555..***9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.41E-2230123IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.9331124IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-2031123IPR015300DNA-binding pseudobarrel domain
CDDcd100173.64E-1832121No hitNo description
SMARTSM010192.6E-1233124IPR003340B3 DNA binding domain
PfamPF023624.1E-1443122IPR003340B3 DNA binding domain
PROSITE profilePS5086310.348353450IPR003340B3 DNA binding domain
CDDcd100179.05E-7362441No hitNo description
Gene3DG3DSA:2.40.330.101.1E-9362447IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-10362447IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MAKRRDFTSD DSPLELIQGR QDDPSSSCAV TRFFQVMIGD DLSKVLYLPS AFAETVMHLA  60
GQVVQLEDSS GLRWDVLLRF TGGSLFFDRG WCKFFSDHSI KEGEFLVFDF VKKGHFVVHI  120
FGTTATERTG FDHGGDPQTS SKRPTDRTFS DADTTRGPEI SGRVVKSEIN GLPENLPGTM  180
QNEDPVCMVV RDNATGFHGE NRGFLFDLSS FETGKQPSEA ECVTDFNKIN NVVAGFRRGF  240
PSTSKKAEAF TDKFAITSGK TDTNPLPRRS EAAVPQRIQR FEKSEMKKAP TDFSRVDNRK  300
YFIEKTPLKR QKFEAPSPDH TNDHHHRSAQ RLLKVCPKKE MDARNSVQAA ESVETNNAEC  360
QVKSLAYLVV PVSVVGMSRR RDRASKRHIL RLRDSMGRLW PVLMADMVTV RALTSNWTNF  420
CKFNGIRLGD GLSFHHQEDG SYAVTVTTPA L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084041.13e-45uncharacterized protein LOC105166397
TrEMBLS8E5K50.0S8E5K5_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22102352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.12e-13B3 family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]