PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS67314.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ERF
Protein Properties Length: 157aa    MW: 17020.5 Da    PI: 10.702
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS67314.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.8e-18553355
         AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                y+GVr +  +g+Wv+eIr p++   + r++lg+f t+e+Aa+a++ a+ +++g
  EPS67314.1  5 YRGVRMRN-WGKWVSEIRQPRK---KSRIWLGTFPTPEMAARAHDVAAMSIKG 53
                9****998.**********843...6**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.0E-13353IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-32462IPR001471AP2/ERF domain
SMARTSM003801.1E-35467IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-22462IPR016177DNA-binding domain
PROSITE profilePS5103223.143461IPR001471AP2/ERF domain
PRINTSPR003671.3E-10516IPR001471AP2/ERF domain
CDDcd000182.09E-30563No hitNo description
PRINTSPR003671.3E-102743IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
KRPAYRGVRM RNWGKWVSEI RQPRKKSRIW LGTFPTPEMA ARAHDVAAMS IKGSSAILNF  60
PHLAGVLPRP ASLSPRDVQA AAAKAAAMEK LDAAESPPRR RPTASPSSSS SSLDLSAASE  120
ELGEIVRLPS LGSSPLEFLE KKTEFVCADN TPALDTW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-195621573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtPutative transcriptional activator.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00529DAPTransfer from AT5G25810Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024165955.12e-60dehydration-responsive element-binding protein 3-like
SwissprotQ391271e-54TINY_ARATH; Ethylene-responsive transcription factor TINY
SwissprotQ9LYD31e-54DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLS8CJJ91e-108S8CJJ9_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_004291182.14e-58(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.12e-47ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]