PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS66922.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

Dof

Protein Properties

Length: 287aa MW: 30654.1 Da PI: 7.763

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS66922.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125	2.5e-39	37	95	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++alkcprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+s EPS66922.1 37 QQALKCPRCDSINTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRS 95 7899*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-28	27	94	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.5E-34	38	94	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.469	40	94	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	42	78	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005730	Cellular Component	nucleolus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MMDSSTSIHH QETLESILIS TKQPPSQQEK KPRPSDQQAL KCPRCDSINT KFCYYNNYSL 60 SQPRYFCKSC RRYWTKGGTL RNVPVGGGCR KNKRSCSSSM SSSTSKRNQG MGGPIPNPIP 120 CLGPIGYDSN DLTLAIARLQ KQASSQQQQQ QHIGGGGLVE EHDFGIWGNP NHGMSLNDVV 180 VGASSFDPIH HHHHHHHPYY GGGGDLSLIE NAGEFQEMGI QFGGYCGVDG GGSVVKQEIC 240 GGGGGGAGGG SESRILWGFP WQAIGGGGGG VDGELSGWHG LVNSPLM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011089362.1	2e-84	dof zinc finger protein DOF2.1
TrEMBL	S8E3T4	0.0	S8E3T4_9LAMI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28510.1	3e-37	Dof family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]