PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS66481.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family WRKY
Protein Properties Length: 172aa    MW: 19797.4 Da    PI: 10.5008
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS66481.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.36.6e-2874126659
                 -EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   6 nWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +Wr YGqK+vkg ++prsYYrCt+++Cpvkkkver   d++v ei+YegeHnh 
  EPS66481.1  74 RWRHYGQKMVKGGQHPRSYYRCTHPNCPVKKKVERRF-DGQVEEIVYEGEHNHV 126
                 7************************************.***************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007742.3E-2771127IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.1E-2573127IPR003657WRKY domain
SuperFamilySSF1182902.88E-2274128IPR003657WRKY domain
PfamPF031062.9E-2174125IPR003657WRKY domain
PROSITE profilePS5081121.25374128IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MEEQRTTRTV IARPVACKPT MPIRFSTIES HAPSSSSSSS SSSSVTPRTV RLRRPIRDSK  60
QEESVQASIF PNDRWRHYGQ KMVKGGQHPR SYYRCTHPNC PVKKKVERRF DGQVEEIVYE  120
GEHNHVPPPL TLPTQHPTII QVNEEESEAQ SKRIKRVKNK HTSCNPAEMQ RK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-15741291975WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLS8CNV31e-123S8CNV3_9LAMI; Uncharacterized protein
STRINGcassava4.1_006823m2e-24(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.16e-24WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]