PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS66389.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family bHLH
Protein Properties Length: 528aa    MW: 58487.8 Da    PI: 6.2188
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS66389.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88.4e-13378424455
                 HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  EPS66389.1 378 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITELQ 424
                 799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.0E-5346238IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.85374423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-18377435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.91E-14377427No hitNo description
PfamPF000102.9E-10378424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-18378435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-16380429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MGFFGWNNED RVLAAAVLGT KAFDYLMSSS VSAECSLMGV GDDENLQNKL SDLVERPNPS  60
NFSWNYAMFW QLSRSRCGDQ RVLGWGDGCC REPHPHEEQQ SVSNQKSMAD EDESQQRMRK  120
RVLQKLHKSF GGTDDECYAL GLDRVTDTEM FFLASMYFSF PAGQGGPGRC FGSRKHIWLS  180
NPNSRSWSLD YCVRSSLAKS AGIQTIVLIP TPVGVVEIGS VRNIPENLEV LKLIASMFSF  240
FPTAAPPLTG LAIGNVNSHP PKIFGQDLNS SRSQFRPWEE TVIKKGGMVP FGGNQNGFQY  300
SSSSISSSNV RTKPWPSEVQ IDFSGQQKGV EECENSSNPE VVGGGSKGGM MVSAEDDKKR  360
RPRKRGRKPA NGRDEPLNHV EAERQRREKL NQRFYALRAV VPNISKMDKA SLLGDAIAYI  420
TELQKKVNEL EDEKEGKVEL DVVGGGDGDE VEVRVRCPLA AHPAAPLVEA IRKGDGSIVE  480
AKTGAGNDRI YETFVVKWEG SERVSREKLM EAIFDVPSTF ELDRNQPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-29372434264Transcription factor MYC2
5gnj_B5e-29372434264Transcription factor MYC2
5gnj_E5e-29372434264Transcription factor MYC2
5gnj_F5e-29372434264Transcription factor MYC2
5gnj_G5e-29372434264Transcription factor MYC2
5gnj_I5e-29372434264Transcription factor MYC2
5gnj_M5e-29372434264Transcription factor MYC2
5gnj_N5e-29372434264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1357367KKRRPRKRGRK
2359367RRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093944.10.0transcription factor bHLH13-like
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLS8CHH20.0S8CHH2_9LAMI; Uncharacterized protein
STRINGXP_009781532.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35852348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-136bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  4. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]