PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS66325.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

Dof

Protein Properties

Length: 285aa MW: 30622.9 Da PI: 7.1321

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS66325.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.6	2.7e-38	36	92	4	60
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+ EPS66325.1 36 QALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKR 92 789***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-29	33	92	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.1E-33	37	92	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.618	38	92	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	40	76	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MQDIHAIGGG GDGGGRFFGG GDRRMRPHSH PNNHLQALKC PRCDSLNTKF CYYNNYNLSQ 60 PRHFCKSCRR YWTKGGVLRN VPVGGGCRKT KRGNQKSGEG SGEHAVKAQS SSSTESSSKT 120 AAAMAAATVP EEPPTVSNSA SIASIGAVYN FSDSKFFPSF DNQSALLNPP TDAQIFPSAF 180 AGLIPAPPSS SPEMMGFGMV RAQADFGAPA SHNPHPLTSE VEAFELLPHM KTTVNDGRLT 240 APDWETPTGG GDHALFDLTA DVDPVYWTQP QWTDSDHQHS LNFLP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	13	20	GGRFFGGG

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00570	DAP	Transfer from AT5G60850	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011072952.1	2e-73	dof zinc finger protein DOF5.4-like
TrEMBL	S8CHK7	0.0	S8CHK7_9LAMI; Uncharacterized protein
STRING	Migut.K01260.1.p	2e-62	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	5e-48	OBF binding protein 4

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]